Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NBE99_RS03030 Genome accession   NZ_CP098039
Coordinates   625652..626017 (-) Length   121 a.a.
NCBI ID   WP_149817109.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HN-54     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 620652..631017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBE99_RS03020 (NBE99_03015) - 621834..624917 (-) 3084 WP_250683031.1 methyl-accepting chemotaxis protein -
  NBE99_RS03025 (NBE99_03020) - 625116..625646 (-) 531 WP_250683032.1 chemotaxis protein CheW -
  NBE99_RS03030 (NBE99_03025) pilH 625652..626017 (-) 366 WP_149817109.1 response regulator transcription factor Machinery gene
  NBE99_RS03035 (NBE99_03030) - 626098..627330 (-) 1233 WP_250683033.1 response regulator -
  NBE99_RS03040 (NBE99_03035) - 627346..627981 (-) 636 WP_250683034.1 MerR family transcriptional regulator -
  NBE99_RS03045 (NBE99_03040) aroA 628302..629624 (-) 1323 WP_250683035.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  NBE99_RS03050 (NBE99_03045) - 629673..630203 (-) 531 WP_250683036.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13520.60 Da        Isoelectric Point: 4.5748

>NTDB_id=693798 NBE99_RS03030 WP_149817109.1 625652..626017(-) (pilH) [Thermosynechococcus sp. HN-54]
MSKVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMNGYEVCRQIKSDPRTQSIPVVI
CSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=693798 NBE99_RS03030 WP_149817109.1 625652..626017(-) (pilH) [Thermosynechococcus sp. HN-54]
ATGAGCAAAGTCTTAGTTGTCGAAGATAGTCCACCCCAGCGGGAAATGATTAGCGAATTGCTAGCGAAAACAGGCTTTGA
AGTGACGGTTGCCACCGATGGTGTCGAGGCAATGGAACAATTGCAGCAGAGCACGCCAGACGTTGTTGTTCTCGACATTG
TCATGCCCCGCATGAATGGGTATGAAGTCTGTCGCCAAATTAAGTCCGACCCTCGCACCCAATCCATTCCCGTGGTTATC
TGTAGCTCCAAAGGTGAGGAGTTTGATCGCTATTGGGGCATGAAACAGGGGGCTGATGCGTACATCACGAAGCCCTTTGA
CCCCAAAGAACTCGTTGGCACCATCAAGCAACTCTTGCGAGGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

72.727

100

0.727
  pilG Acinetobacter baumannii strain A118

42.609

95.041

0.405
  micA Streptococcus pneumoniae Cp1015

40.833

99.174

0.405
  pilL-C Synechocystis sp. PCC 6803

40.336

98.347

0.397
  scnR Streptococcus mutans UA159

39.496

98.347

0.388
  vicR Streptococcus mutans UA159

36.667

99.174

0.364
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364