Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M8C01_RS04490 Genome accession   NZ_CP097858
Coordinates   980338..980637 (+) Length   99 a.a.
NCBI ID   WP_020196004.1    Uniprot ID   A0A0C1VUB7
Organism   Vibrio owensii strain GL-605     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975338..985637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS04480 - 977845..978117 (+) 273 WP_005430934.1 HU family DNA-binding protein -
  M8C01_RS04485 ppiD 978332..980191 (+) 1860 WP_020196005.1 peptidylprolyl isomerase -
  M8C01_RS04490 comEA 980338..980637 (+) 300 WP_020196004.1 helix-hairpin-helix domain-containing protein Machinery gene
  M8C01_RS04495 rrtA 980760..981311 (-) 552 WP_264404378.1 rhombosortase -
  M8C01_RS04500 - 981315..981932 (+) 618 WP_264404380.1 tRNA-uridine aminocarboxypropyltransferase -
  M8C01_RS04505 - 981953..983287 (-) 1335 WP_264405582.1 anti-phage deoxyguanosine triphosphatase -
  M8C01_RS04510 yfbR 983291..983875 (-) 585 WP_264404382.1 5'-deoxynucleotidase -
  M8C01_RS04515 - 983959..985173 (-) 1215 WP_005437583.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10819.59 Da        Isoelectric Point: 7.9988

>NTDB_id=693102 M8C01_RS04490 WP_020196004.1 980338..980637(+) (comEA) [Vibrio owensii strain GL-605]
MKWMLTLCLLLLAPMSWAEEGKSVTTKAAKYEGIEITVNVNTASAEEIATLLNGIGTKKAQDIVEYRNEHGPFKTAADLS
KVKGIGEATVKKNQDRILL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=693102 M8C01_RS04490 WP_020196004.1 980338..980637(+) (comEA) [Vibrio owensii strain GL-605]
ATGAAATGGATGTTAACACTGTGCTTGCTGCTATTGGCGCCAATGAGTTGGGCGGAAGAAGGAAAGTCGGTAACGACAAA
AGCGGCCAAGTATGAAGGCATTGAAATCACCGTTAATGTGAATACGGCTTCCGCGGAAGAAATTGCGACACTACTGAATG
GTATTGGAACGAAAAAAGCGCAAGACATTGTTGAGTACCGCAACGAACATGGTCCATTTAAAACCGCAGCGGACTTAAGC
AAAGTGAAAGGCATTGGTGAAGCGACGGTGAAAAAGAACCAAGATCGCATCTTACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1VUB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio campbellii strain DS40M4

83.838

100

0.838
  comEA Vibrio parahaemolyticus RIMD 2210633

74.747

100

0.747
  comEA Vibrio cholerae C6706

59

100

0.596
  comEA Vibrio cholerae strain A1552

59

100

0.596
  comE1/comEA Haemophilus influenzae Rd KW20

43.75

100

0.495
  comEA/comE1 Glaesserella parasuis strain SC1401

39.252

100

0.424
  comEA Acinetobacter baumannii strain A118

30.894

100

0.384