NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	M9415_RS03835	Genome accession	NZ_CP097790
Coordinates	802398..802832 (+)	Length	144 a.a.
NCBI ID	WP_005741096.1	Uniprot ID	-
Organism	Pasteurella multocida strain 31971
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 797398..807832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M9415_RS03805 (M9415_03805)	tadA	797508..798008 (-)	501	WP_005755875.1	tRNA adenosine(34) deaminase TadA	-
M9415_RS03810 (M9415_03810)	-	798023..798874 (-)	852	WP_005751072.1	thymidylate synthase	-
M9415_RS03815 (M9415_03815)	lgt	798880..799683 (-)	804	WP_005751073.1	prolipoprotein diacylglyceryl transferase	-
M9415_RS03820 (M9415_03820)	-	799693..800487 (-)	795	WP_046333443.1	sulfite exporter TauE/SafE family protein	-
M9415_RS03825 (M9415_03825)	rppH	800490..801086 (-)	597	WP_005722417.1	RNA pyrophosphohydrolase	-
M9415_RS03830 (M9415_03830)	ampD	801672..802238 (-)	567	WP_005719130.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
M9415_RS03835 (M9415_03835)	pilA	802398..802832 (+)	435	WP_005741096.1	prepilin peptidase-dependent pilin	Machinery gene
M9415_RS03840 (M9415_03840)	pilB	802832..804217 (+)	1386	WP_046333442.1	GspE/PulE family protein	Machinery gene
M9415_RS03845 (M9415_03845)	-	804217..805428 (+)	1212	WP_046333441.1	type II secretion system F family protein	-
M9415_RS03850 (M9415_03850)	-	805428..806150 (+)	723	WP_046333440.1	A24 family peptidase	-
M9415_RS03855 (M9415_03855)	coaE	806165..806785 (+)	621	WP_046333439.1	dephospho-CoA kinase	-
M9415_RS03860 (M9415_03860)	yacG	806796..806999 (+)	204	WP_046333438.1	DNA gyrase inhibitor YacG	-
M9415_RS03865 (M9415_03865)	-	806999..807268 (+)	270	WP_005722568.1	GNAT family N-acetyltransferase	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15058.48 Da Isoelectric Point: 9.1281

                                >NTDB_id=692489 M9415_RS03835 WP_005741096.1 802398..802832(+) (pilA) [Pasteurella multocida strain 31971]

MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR

ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide

Download Length: 435 bp

                                >NTDB_id=692489 M9415_RS03835 WP_005741096.1 802398..802832(+) (pilA) [Pasteurella multocida strain 31971]

ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT

TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCAGCTC

CTTATCGTGCTGAGGTAGAGCTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT

GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG

CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC

AATCTGACATTTTCCCAGCAGGATTTTGTGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Haemophilus influenzae 86-028NP	63.194	100	0.632
pilA	Haemophilus influenzae Rd KW20	61.111	100	0.611
pilA	Glaesserella parasuis strain SC1401	52.349	100	0.542
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.806	100	0.368
pilA	Vibrio cholerae strain A1552	36.806	100	0.368
pilA	Vibrio cholerae C6706	36.806	100	0.368

Detailed information NTG0692489