Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STO1_RS08305 Genome accession   NZ_AP018338
Coordinates   1630179..1632155 (-) Length   658 a.a.
NCBI ID   WP_096422792.1    Uniprot ID   A0A223ZVY4
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1625179..1637155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08285 (STO1_015890) amiF 1625674..1626603 (-) 930 WP_001291314.1 ATP-binding cassette domain-containing protein Regulator
  STO1_RS08290 (STO1_015900) amiE 1626614..1627681 (-) 1068 WP_000159803.1 ABC transporter ATP-binding protein Regulator
  STO1_RS08295 (STO1_015910) amiD 1627690..1628616 (-) 927 WP_000103693.1 oligopeptide ABC transporter permease OppC Regulator
  STO1_RS08300 (STO1_015920) amiC 1628616..1630112 (-) 1497 WP_000759887.1 ABC transporter permease Regulator
  STO1_RS08305 (STO1_015930) amiA 1630179..1632155 (-) 1977 WP_096422792.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS08315 (STO1_015940) - 1632683..1634014 (-) 1332 WP_000390009.1 hemolysin family protein -
  STO1_RS08320 (STO1_015950) endA 1634140..1634973 (-) 834 WP_096422794.1 DNA/RNA non-specific endonuclease Machinery gene
  STO1_RS08325 (STO1_015960) - 1635014..1635208 (-) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  STO1_RS08330 (STO1_015970) murA 1635195..1636478 (-) 1284 WP_033585515.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STO1_RS08335 - 1636502..1636732 (-) 231 WP_080568240.1 DUF1146 family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72731.85 Da        Isoelectric Point: 4.8247

>NTDB_id=69080 STO1_RS08305 WP_096422792.1 1630179..1632155(-) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKSRVLVAAGVALLATGVLAACGSKSSDSTAPKNYGYIYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLTPA
VAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADKKSEALYLAETSVKGLSDYLSGNSKDFSTVG
VKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEDFEKSKGSDFAKATDPTSLLYNGPFLLKGLTTKSSIEFAKNEQYWD
KDNVHLDKVTLAFYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVAESYKDNIFYTPSGPGIAGLGVNIDRQGYKYTSK
TTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPGFVSAGEKTFGDLVTEKMATYGDEWKNV
NFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEGNVVIDIQQVSKDEL
NNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNSEQTKTYMGYDDPANAAAAQVGLKEYDKLVDEAAKETDD
LNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPFISRVVPFSASYSQSGDKSSDVYFKYIQLQDKVVTKADYEQAREKWLK
EKKESNEKVQKELTNHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=69080 STO1_RS08305 WP_096422792.1 1630179..1632155(-) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAAAAAGCAGAGTATTGGTTGCAGCAGGGGTTGCCTTATTAGCGACTGGCGTACTAGCTGCCTGCGGTTCTAAATC
ATCTGATTCAACGGCGCCAAAAAATTATGGTTATATCTATTCAGCTGACCCAGAAACATTGGATTACCTCATTTCAGGGA
AACAAAGTACTAAGATTGCCACTTCAAATGGCATTGATGGTCTCTTCACAAATGACAAATATGGGAATTTGACTCCCGCA
GTTGCGGAAGACTGGTCAGTCTCAAAAGATGGTTTGACTTATACCTACAAAATCCGTAAAGGTGTTAAATGGATGACATC
TGATGGAGAAGAGTACGCTGAAGTAACAGCTAAAGATTTCGTAAATGGTTTGAAACACGCAGCAGATAAGAAATCCGAAG
CTCTATATCTAGCAGAAACTTCTGTTAAAGGATTGTCTGATTATTTGTCTGGAAATTCAAAAGACTTTTCTACGGTAGGT
GTGAAGGCAGTTGATGATTATACTCTTGAGTATACCTTGAACCAACCAGAACCGTATTGGAACTCTAAGATGGCTTATTC
AATCTTCTGGCCATTGAACGAAGATTTTGAAAAATCAAAAGGATCAGATTTTGCCAAAGCAACAGATCCTACGTCCTTGC
TTTATAATGGTCCGTTCTTGCTAAAAGGTTTGACTACTAAATCTTCTATCGAATTTGCTAAGAATGAGCAGTACTGGGAT
AAGGATAATGTTCACCTTGATAAAGTTACCCTTGCTTTCTATGATGGGTCAGACCAAGAGTCCATTGAACGTAACTTTAC
AAGTGGAGCATACAGCTATGCTCGCCTTTTCCCAACAAGTTCAAACTATTCTAAAGTAGCAGAAAGCTATAAGGATAACA
TCTTCTACACTCCATCAGGACCAGGGATTGCTGGTTTGGGTGTGAATATTGACCGTCAAGGTTACAAATACACTTCTAAG
ACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCTCTTCTTAACAAGGATTTCCGTCAGGCTTTGAACTTTGCCTTTGA
CCGTACTTCTTACTCAGCACAAATCAATGGTAAAGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAGGTT
TTGTCTCTGCAGGTGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGGCTACTTATGGTGATGAGTGGAAGAATGTA
AACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCCGAATTTGCCAAAGCTAAAACTGCATTGGA
AGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATTCCAGTAGACCAAACATCTAAAAACTATATCGCACGTATCCAAT
CTTTCAAACAATCAGTTGAAACAGTACTTGGCGAAGGCAATGTAGTCATTGATATCCAACAAGTTTCTAAAGATGAGTTG
AACAATATCACTTACTATGCTGCAAGCGCTGCGGCAGAAGATTGGGATCTCTCAGGAGCAGTTGGGTGGAACCCAGACTA
TGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACTAATAGCGAGCAAACAAAAACATATATGGGTTACGACGATC
CAGCAAATGCAGCAGCTGCACAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCTGCTAAAGAAACTGACGAT
TTGAATGTTCGTTATGAAAAATACGCGGCTGCTCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTCATC
AAGTGGTGCTGCACCATTCATTTCTCGTGTTGTACCATTCTCTGCATCATACAGCCAGTCTGGAGATAAGAGCTCAGATG
TATACTTCAAGTATATTCAGTTGCAAGACAAGGTTGTAACGAAAGCTGATTACGAACAAGCTCGTGAGAAATGGCTCAAA
GAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGACGAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223ZVY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

68.389

100

0.684
  amiA3 Streptococcus thermophilus LMD-9

68.285

100

0.684
  amiA3 Streptococcus thermophilus LMG 18311

68.134

100

0.682

Multiple sequence alignment