Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   STO1_RS08285 Genome accession   NZ_AP018338
Coordinates   1625674..1626603 (-) Length   309 a.a.
NCBI ID   WP_001291314.1    Uniprot ID   A0A1X1GNC8
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620674..1631603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08265 (STO1_015850) - 1620912..1621475 (-) 564 WP_000185817.1 ECF transporter S component -
  STO1_RS08270 (STO1_015860) - 1621887..1622390 (-) 504 WP_000181354.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  STO1_RS08275 (STO1_015870) trkA 1622793..1624142 (+) 1350 WP_000706803.1 Trk system potassium transporter TrkA -
  STO1_RS08280 (STO1_015880) - 1624146..1625585 (+) 1440 WP_001043439.1 TrkH family potassium uptake protein -
  STO1_RS08285 (STO1_015890) amiF 1625674..1626603 (-) 930 WP_001291314.1 ATP-binding cassette domain-containing protein Regulator
  STO1_RS08290 (STO1_015900) amiE 1626614..1627681 (-) 1068 WP_000159803.1 ABC transporter ATP-binding protein Regulator
  STO1_RS08295 (STO1_015910) amiD 1627690..1628616 (-) 927 WP_000103693.1 oligopeptide ABC transporter permease OppC Regulator
  STO1_RS08300 (STO1_015920) amiC 1628616..1630112 (-) 1497 WP_000759887.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35053.30 Da        Isoelectric Point: 7.2939

>NTDB_id=69076 STO1_RS08285 WP_001291314.1 1625674..1626603(-) (amiF) [Streptococcus oralis subsp. tigurinus strain osk_001]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSELIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEERKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAEVARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=69076 STO1_RS08285 WP_001291314.1 1625674..1626603(-) (amiF) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTTGCCGTTAAAAA
CGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTCGTTGGTGAATCTGGTAGTGGGAAAACGACGATTGGTCGTG
CCATTATTGGTTTGAATAATACTAGTAAAGGTGAAATCATCTTTGACGGTCATAAGATCAATGGGAAAAAATCTCATAAG
GAATCTTCAGAGTTGATCCGCCGTATCCAGATGATTTTCCAAGACCCTGCAGCCAGCTTAAATGAACGTGCGACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTCAAAGATGAAGAAGAGCGAAAAGAAAAAGTTCAAAAGATGA
TTCATGAAGTTGGTCTTTTGAAAGAGCACTTGACCCGTTACCCACACGAGTTTTCTGGTGGTCAACGTCAACGTATTGGG
ATTGCCCGTGCTCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTGTCTGTTCGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTTCAAAAAGAATTGGGCTTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCAGTTATCTATAAGGGTGTTATCGTTGAAGTAGCGGAGACAGAGGAGTTGTTTAAC
AATCCGGTTCATCCGTACACTCAAGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAAGTCTATGACCCTAGCCAACATGACTATGAGACAGACAAACCATCTATGGTGGAAATTCGTCCAGGTCACTATGTTT
GGGCTAATCAAGCGGAAGTTGCTCGCTACAAAGAAGCACTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1GNC8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.466

100

0.845
  amiF Streptococcus thermophilus LMG 18311

84.142

100

0.841
  amiF Streptococcus thermophilus LMD-9

83.819

100

0.838

Multiple sequence alignment