Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   STO1_RS08300 Genome accession   NZ_AP018338
Coordinates   1628616..1630112 (-) Length   498 a.a.
NCBI ID   WP_000759887.1    Uniprot ID   A0A1X1FZH9
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1623616..1635112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08280 (STO1_015880) - 1624146..1625585 (+) 1440 WP_001043439.1 TrkH family potassium uptake protein -
  STO1_RS08285 (STO1_015890) amiF 1625674..1626603 (-) 930 WP_001291314.1 ATP-binding cassette domain-containing protein Regulator
  STO1_RS08290 (STO1_015900) amiE 1626614..1627681 (-) 1068 WP_000159803.1 ABC transporter ATP-binding protein Regulator
  STO1_RS08295 (STO1_015910) amiD 1627690..1628616 (-) 927 WP_000103693.1 oligopeptide ABC transporter permease OppC Regulator
  STO1_RS08300 (STO1_015920) amiC 1628616..1630112 (-) 1497 WP_000759887.1 ABC transporter permease Regulator
  STO1_RS08305 (STO1_015930) amiA 1630179..1632155 (-) 1977 WP_096422792.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS08315 (STO1_015940) - 1632683..1634014 (-) 1332 WP_000390009.1 hemolysin family protein -
  STO1_RS08320 (STO1_015950) endA 1634140..1634973 (-) 834 WP_096422794.1 DNA/RNA non-specific endonuclease Machinery gene

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55732.15 Da        Isoelectric Point: 9.1164

>NTDB_id=69079 STO1_RS08300 WP_000759887.1 1628616..1630112(-) (amiC) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TMDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLLDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREIANYGKDDPYTATESNYQYPSMIASSAVAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGV
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHVFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=69079 STO1_RS08300 WP_000759887.1 1628616..1630112(-) (amiC) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAAAATATATTTTTATGCGTGTCTTGCGCTCATTGTTGTCTATTTTCTTGGTGACAACCTTGACCTACACGATTAT
CTATACGATGGTTCCTCGGAAACTGATTTTCAAGCAGGATACCAACTACAACAAGATTGCAACAACTCCAGATAAGCGGG
ATAATTATGAGAATACCGTTTATGAACGTATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCTAGC
ACGATGGACTCATCTGTAACAGTAGATGCCAATGATACCAATAAGGCAATCTACGAAAAATACATCAACCAACTCGGTAA
TGGTTGGACGTTAGGTGTCTTTTCAGAGAGTGGTCAGTTCTATGCTACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATGCGAACTTACTTGATATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACCAAACATAAATACCTTTTGTATTTCAACAA
TCAATTCCCGTTTGTACACCAAAACTTTGTGAACATTAACTTGGGTGACTCTTACCCAACTTATGCGAACACGCCAGTGC
TTCAAGTTATCACACAAGGTCAAGGACAAACTAAGACATCAGAAGTTCAATTCCCTACTGGTAAAAAGACTTCGTCTGTA
GATATTTACTCTCGTACCTACAAATCTCCAAGTCAAGCAGATGCGCGTGAAATAGCTAACTATGGTAAAGACGATCCATA
TACAGCTACAGAAAGTAACTACCAATATCCATCTATGATTGCAAGCTCAGCTGTTGCTGGTTTGATTGGTTTGATTATTT
CTTATGCTATTGCGATTCCTCTTGGATCTGCTATGGCTCGCCACAAGAATACTTGGATTGACAGCTTCTCAACAGGTGTT
CTAACCTTCTTGCTTGCACTTCCAACGATTGCCTTGGTTTATATCGTTCGCTTGATTGGATCATCTATTGGTCTGCCTGA
CTCATTCCCTATCTTGGGGGCTGGAGATTGGCGTTCCTATGTCTTGCCAGCAGTCATTCTAGGTTTGCTGGGAGCACCAA
GTACAGCAATCTGGATTCGTCGTTACATGATTGACTTGCAATCTCAGGACTTTGTCCGTTTTGCTCGTGCAAAAGGTTTA
TCTGAAAAAGAAATCTCAAATAAACACGTCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCAGGTGCCGTAAT
CGGGGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTTA
AGGCATCAAATAACTCAATGGTAGTTGGTCTCGTCTTCATCTTTACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACTATGCTTGACCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1FZH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.506

100

0.765
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment