Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   STO1_RS08320 Genome accession   NZ_AP018338
Coordinates   1634140..1634973 (-) Length   277 a.a.
NCBI ID   WP_096422794.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1629140..1639973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08305 (STO1_015930) amiA 1630179..1632155 (-) 1977 WP_096422792.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS08315 (STO1_015940) - 1632683..1634014 (-) 1332 WP_000390009.1 hemolysin family protein -
  STO1_RS08320 (STO1_015950) endA 1634140..1634973 (-) 834 WP_096422794.1 DNA/RNA non-specific endonuclease Machinery gene
  STO1_RS08325 (STO1_015960) - 1635014..1635208 (-) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  STO1_RS08330 (STO1_015970) murA 1635195..1636478 (-) 1284 WP_033585515.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STO1_RS08335 - 1636502..1636732 (-) 231 WP_080568240.1 DUF1146 family protein -
  STO1_RS08340 (STO1_015980) sepM 1636788..1637825 (-) 1038 WP_096422796.1 SepM family pheromone-processing serine protease Regulator
  STO1_RS08345 (STO1_015990) coaD 1637809..1638297 (-) 489 WP_084872220.1 pantetheine-phosphate adenylyltransferase -
  STO1_RS08350 (STO1_016000) rsmD 1638287..1638826 (-) 540 WP_000706949.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  STO1_RS08355 (STO1_016010) asnA 1638891..1639883 (-) 993 WP_000747987.1 aspartate--ammonia ligase -

Sequence

Protein


Download         Length: 277 a.a.        Molecular weight: 30398.17 Da        Isoelectric Point: 10.0507

>NTDB_id=69081 STO1_RS08320 WP_096422794.1 1634140..1634973(-) (endA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MNKKTRQTLIGLLLFLLLAAGSYYIKQMQSAPNSPRTKVSQKKQASEAPSQELAKSVLTESIKNQIKGELEWNGAGAFVV
NGNKTNLDAKVSSKPYADNKTKIVGKETVPTVANAILSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGAYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESLVRKALDQNKRVRYRVTLHYATNEDLVPSASQIE
AKSSDGELEFNVLIPNVQKGIQLDYRTGQVTVTDQKQ

Nucleotide


Download         Length: 834 bp        

>NTDB_id=69081 STO1_RS08320 WP_096422794.1 1634140..1634973(-) (endA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAACAAAAAAACAAGACAGACTTTGATAGGGTTACTTCTATTTTTACTCTTGGCTGCGGGAAGCTATTATATCAAGCA
GATGCAGTCGGCACCAAATAGCCCTAGAACGAAGGTTAGTCAGAAAAAACAAGCTTCAGAAGCTCCCAGTCAGGAGCTGG
CTAAAAGTGTCTTAACTGAGTCAATCAAAAACCAAATCAAGGGGGAGCTCGAGTGGAATGGAGCAGGAGCCTTTGTTGTC
AATGGCAATAAAACCAATCTAGATGCCAAGGTTTCTAGTAAACCCTATGCGGATAATAAGACAAAGATAGTTGGAAAAGA
AACAGTCCCAACTGTTGCCAATGCCATCTTATCCAAAGCGACTCGGCAATATAAGAATCGTGAAGAGACTGGGAATGGCT
CCACCTCTTGGACGCCACCAGGATGGCATCAGGTTAAGAATCTAAAGGGAGCCTATACACATGCAGTTGATAGAGGACAC
CTGCTGGGCTATGCCTTGATAGGTGGTTTGGATGGTTTTGATGCCTCTACCAGCAACCCCAAGAACATTGCAGTCCAGAC
AGCTTGGGCGAACCAAGCGCAGGCTGAGGATTCGACAGGTCAGAACTACTATGAGAGTTTGGTCAGAAAAGCCTTAGACC
AAAACAAGAGGGTCCGTTACCGCGTGACACTCCACTATGCGACAAATGAGGATCTAGTTCCATCTGCTTCACAAATTGAA
GCCAAATCTTCGGATGGCGAATTGGAGTTCAACGTGCTAATCCCCAATGTTCAAAAGGGAATCCAGCTTGATTACCGAAC
AGGTCAAGTAACGGTGACAGATCAGAAACAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

89.744

98.556

0.884
  endA Streptococcus pneumoniae D39

89.744

98.556

0.884
  endA Streptococcus pneumoniae R6

89.744

98.556

0.884
  endA Streptococcus pneumoniae TIGR4

89.744

98.556

0.884

Multiple sequence alignment