Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   STO1_RS08340 Genome accession   NZ_AP018338
Coordinates   1636788..1637825 (-) Length   345 a.a.
NCBI ID   WP_096422796.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1631788..1642825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08315 (STO1_015940) - 1632683..1634014 (-) 1332 WP_000390009.1 hemolysin family protein -
  STO1_RS08320 (STO1_015950) endA 1634140..1634973 (-) 834 WP_096422794.1 DNA/RNA non-specific endonuclease Machinery gene
  STO1_RS08325 (STO1_015960) - 1635014..1635208 (-) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  STO1_RS08330 (STO1_015970) murA 1635195..1636478 (-) 1284 WP_033585515.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  STO1_RS08335 - 1636502..1636732 (-) 231 WP_080568240.1 DUF1146 family protein -
  STO1_RS08340 (STO1_015980) sepM 1636788..1637825 (-) 1038 WP_096422796.1 SepM family pheromone-processing serine protease Regulator
  STO1_RS08345 (STO1_015990) coaD 1637809..1638297 (-) 489 WP_084872220.1 pantetheine-phosphate adenylyltransferase -
  STO1_RS08350 (STO1_016000) rsmD 1638287..1638826 (-) 540 WP_000706949.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  STO1_RS08355 (STO1_016010) asnA 1638891..1639883 (-) 993 WP_000747987.1 aspartate--ammonia ligase -
  STO1_RS08360 (STO1_016020) - 1639993..1640676 (-) 684 WP_096422800.1 Bax inhibitor-1/YccA family protein -
  STO1_RS08365 (STO1_016030) - 1640732..1641472 (-) 741 WP_033605589.1 TrmH family RNA methyltransferase -
  STO1_RS08370 (STO1_016040) - 1641506..1641784 (+) 279 WP_001174619.1 acylphosphatase -
  STO1_RS08375 (STO1_016050) yidC 1641862..1642791 (+) 930 WP_000835958.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37497.66 Da        Isoelectric Point: 5.2751

>NTDB_id=69082 STO1_RS08340 WP_096422796.1 1636788..1637825(-) (sepM) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKKTRWPLYVILALVLTFLAFVVPLPYYIEVPGGAEDIRQVLKVNETEDTEAGAYQFVTVGIRHATLSHLVYAWLTPFT
DIRSAKETTGGSTDAEFMRINQFYMQTSQNMAKYQGLKTAGKDIELKYLGVYVLTVTDNSTFKGILNIADTVTAVNDKTF
DSSKDLVDYVNSQQLGDTVKVTYEEDGKVKSAEGKIITLENGKNGIGIGLIDRTEVTSDVPIRFSTAGIGGPSAGLMFSL
AIYTQIADPGLRNGRVVAGTGTIDRDGNVGDIGGIDKKVVAASRQGANIFFAPDNPVTEEAKKADPNAKSNYETALEAAK
TIKTEMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=69082 STO1_RS08340 WP_096422796.1 1636788..1637825(-) (sepM) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAGAAAAAAACTAGATGGCCCTTATATGTCATCCTAGCACTAGTATTGACTTTTTTAGCCTTTGTAGTACCTTTACC
CTACTACATAGAAGTTCCAGGTGGAGCGGAAGATATTCGTCAAGTTTTAAAAGTCAATGAAACAGAAGATACAGAAGCAG
GAGCTTACCAGTTTGTAACGGTCGGTATTCGACACGCAACCCTATCACATCTTGTCTATGCTTGGTTAACACCTTTTACG
GATATTAGAAGTGCTAAGGAGACTACGGGTGGCTCTACTGATGCAGAGTTTATGCGGATCAATCAGTTCTACATGCAAAC
ATCCCAAAACATGGCCAAGTATCAAGGACTGAAGACGGCTGGAAAGGATATCGAACTCAAGTATCTGGGTGTCTATGTCT
TGACCGTGACGGACAATTCAACTTTTAAGGGCATTCTGAACATTGCAGATACCGTGACGGCTGTTAATGACAAAACGTTT
GACAGTTCCAAAGATTTGGTCGACTATGTCAATTCTCAACAATTAGGGGATACGGTCAAGGTAACTTATGAAGAAGACGG
AAAAGTCAAGTCTGCAGAAGGTAAAATTATCACTCTCGAAAACGGAAAAAACGGGATTGGGATTGGTTTGATTGACCGTA
CGGAAGTGACCAGTGATGTTCCCATTCGTTTTTCAACAGCTGGTATCGGGGGGCCAAGTGCCGGTCTCATGTTTAGTCTA
GCTATTTACACCCAGATAGCAGATCCAGGACTTCGTAATGGCCGCGTCGTTGCGGGAACGGGAACTATTGATCGTGATGG
AAATGTTGGCGATATTGGTGGAATTGACAAAAAAGTGGTTGCAGCCTCTCGTCAGGGAGCCAACATCTTTTTTGCTCCTG
ACAATCCAGTCACTGAGGAAGCAAAAAAAGCAGATCCCAATGCGAAAAGCAACTATGAAACAGCCCTAGAAGCTGCTAAA
ACGATCAAAACAGAGATGAAAATCGTTCCGGTTAAGACCTTGCAGGATGCGATTGATTACCTTAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment