Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   STO1_RS08295 Genome accession   NZ_AP018338
Coordinates   1627690..1628616 (-) Length   308 a.a.
NCBI ID   WP_000103693.1    Uniprot ID   A0A3R9K8J0
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622690..1633616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS08275 (STO1_015870) trkA 1622793..1624142 (+) 1350 WP_000706803.1 Trk system potassium transporter TrkA -
  STO1_RS08280 (STO1_015880) - 1624146..1625585 (+) 1440 WP_001043439.1 TrkH family potassium uptake protein -
  STO1_RS08285 (STO1_015890) amiF 1625674..1626603 (-) 930 WP_001291314.1 ATP-binding cassette domain-containing protein Regulator
  STO1_RS08290 (STO1_015900) amiE 1626614..1627681 (-) 1068 WP_000159803.1 ABC transporter ATP-binding protein Regulator
  STO1_RS08295 (STO1_015910) amiD 1627690..1628616 (-) 927 WP_000103693.1 oligopeptide ABC transporter permease OppC Regulator
  STO1_RS08300 (STO1_015920) amiC 1628616..1630112 (-) 1497 WP_000759887.1 ABC transporter permease Regulator
  STO1_RS08305 (STO1_015930) amiA 1630179..1632155 (-) 1977 WP_096422792.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34589.54 Da        Isoelectric Point: 9.0162

>NTDB_id=69078 STO1_RS08295 WP_000103693.1 1627690..1628616(-) (amiD) [Streptococcus oralis subsp. tigurinus strain osk_001]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYSIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=69078 STO1_RS08295 WP_000103693.1 1627690..1628616(-) (amiD) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGTCAACAATTGATAAAGAAAAATTTCAGTTCGTAAAACGTGATGATTTTGCCTCTGAAACGATTGATGCTCCTGCCTA
CTCTTACTGGGGCTCTGTATTTAGACAGTTTTTAAAGAAAAAATCAACAGTCATTATGCTAGGAATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTTAGTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGTAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAATTCAATTCTTATCTCTGTAATTGCCACTTTTATTAACCTTGTAATTGGGGTTATTGTTGGTGGAATTTGGGGGA
TTTCCAAATCTGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTTATCGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATCTTCGCTATGAGTGTGACGACTTGGATCGGTATTGCTTATTC
AATTCGTATTCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAATATCATGCCACAATTGGTATCTGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTTATCTCT
TATGAGGCATTCCTTTCTTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCGTACTTGTTCTGGATTCCATTGACAACCTTGATTTTGGTATCCCTATCTCTATTCGTTG
TTGGTCAGAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3R9K8J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment