Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   HT085_RS10960 Genome accession   NZ_AP023069
Coordinates   2080467..2081435 (-) Length   322 a.a.
NCBI ID   WP_003696522.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19854     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075467..2086435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT085_RS10935 (TUM19854C_20680) - 2076009..2077316 (-) 1308 WP_012504094.1 YadA-like family protein -
  HT085_RS10940 (TUM19854C_20690) - 2077302..2077955 (+) 654 WP_048596920.1 IS1595 family transposase -
  HT085_RS10945 (TUM19854C_20700) - 2077990..2078748 (-) 759 WP_003687045.1 ABC transporter ATP-binding protein -
  HT085_RS10950 (TUM19854C_20710) - 2078832..2079458 (-) 627 WP_003690385.1 FmdE family protein -
  HT085_RS10955 (TUM19854C_20720) - 2079503..2080477 (-) 975 WP_003690387.1 iron chelate uptake ABC transporter family permease subunit -
  HT085_RS10960 (TUM19854C_20730) ceuB 2080467..2081435 (-) 969 WP_003696522.1 ABC transporter permease Machinery gene
  HT085_RS10965 - 2081454..2081645 (-) 192 WP_162098110.1 hypothetical protein -
  HT085_RS10970 (TUM19854C_20740) - 2081663..2082628 (-) 966 WP_003696524.1 siderophore ABC transporter substrate-binding protein -
  HT085_RS10975 (TUM19854C_20750) fetA 2082780..2084921 (-) 2142 WP_014580446.1 TonB-dependent siderophore receptor FetA/FrpB -
  HT085_RS10980 (TUM19854C_20760) - 2085427..2085717 (+) 291 WP_003687059.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34402.68 Da        Isoelectric Point: 10.5988

>NTDB_id=68997 HT085_RS10960 WP_003696522.1 2080467..2081435(-) (ceuB) [Neisseria gonorrhoeae strain TUM19854]
MTAKPFSLNLANLLLPAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGSSMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVVEAVATFIAY
KNEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIVSRLTGDRLRQSLPAVALLGASMVLLCDILGRMIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=68997 HT085_RS10960 WP_003696522.1 2080467..2081435(-) (ceuB) [Neisseria gonorrhoeae strain TUM19854]
ATGACTGCCAAACCTTTTTCCCTCAACCTGGCCAACCTCCTGCTGCCGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCGGATGTGTTTTCGCTGTCCGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGTTGACGGGCTCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGTGCGGGCCAAAGTGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTGATCGGGATGTTGGTCTTTATGCTGCTGATCCGCCGCCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGGTTGAGGCGGTGGCGACGTTTATCGCGTAT
AAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTACCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGCGAGACGGTGA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTCATT
GTAACGGTCGGCAATATTCCGTTTATCGGGCTGGTCGTGCCGAATATCGTCAGCCGCCTGACGGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTCGCCCTCTTGGGCGCGTCTATGGTGCTGCTGTGCGATATTTTGGGACGCATGATTGTGTTTCCGT
TTGAAATTCCGGTCTCCACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCCCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(17-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.528

93.478

0.388

Multiple sequence alignment