NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	M5E02_RS16365	Genome accession	NZ_CP097373
Coordinates	3156694..3157290 (+)	Length	198 a.a.
NCBI ID	WP_007500118.1	Uniprot ID	-
Organism	Bacillus safensis strain AHB2
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3151694..3162290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5E02_RS16340 (M5E02_16340)	abc-f	3152011..3153570 (-)	1560	WP_252058336.1	ribosomal protection-like ABC-F family protein	-
M5E02_RS16345 (M5E02_16345)	-	3153638..3153841 (+)	204	WP_252056762.1	hypothetical protein	-
M5E02_RS16350 (M5E02_16350)	-	3153966..3155132 (-)	1167	WP_252056763.1	macrolide family glycosyltransferase	-
M5E02_RS16355 (M5E02_16355)	-	3155301..3156191 (-)	891	WP_252058337.1	ABC transporter substrate-binding protein	-
M5E02_RS16365 (M5E02_16365)	clpP	3156694..3157290 (+)	597	WP_007500118.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
M5E02_RS16370 (M5E02_16370)	-	3157349..3157927 (-)	579	WP_252058338.1	TIGR00730 family Rossman fold protein	-
M5E02_RS16375 (M5E02_16375)	-	3158065..3158406 (+)	342	WP_252056764.1	MazG-like family protein	-
M5E02_RS16380 (M5E02_16380)	-	3158433..3160055 (-)	1623	WP_252056765.1	SulP family inorganic anion transporter	-
M5E02_RS16385 (M5E02_16385)	-	3160094..3160675 (-)	582	WP_252056766.1	carbonic anhydrase	-
M5E02_RS16390 (M5E02_16390)	-	3161230..3162207 (+)	978	WP_252056767.1	D-glycerate dehydrogenase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21846.03 Da Isoelectric Point: 4.6905

                                >NTDB_id=689222 M5E02_RS16365 WP_007500118.1 3156694..3157290(+) (clpP) [Bacillus safensis strain AHB2]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILSLRDKLNQVLAERTGQ

PIEVIERDTDRDNFKTAEEALQYGLIDKVLTRNTEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=689222 M5E02_RS16365 WP_007500118.1 3156694..3157290(+) (clpP) [Bacillus safensis strain AHB2]

ATGAATTTAATACCTACAGTCATTGAGCAAACAAATCGTGGGGAAAGAGCTTACGACATTTATTCTCGTCTTTTAAAAGA

CCGTATTATCATGCTTGGTTCTGCGATCGATGACAATGTTGCCAACTCCATCGTGTCACAGCTGCTTTTCTTAGAAGCTG

AAGATCCAGAAAAAGATATTTCTATCTACATTAACAGCCCTGGCGGTTCAATCACAGCTGGTATGGCCATTTACGATACG

ATGCAATTTATTAAACCAAAGGTATCAACTATTTGTATTGGTATGGCTGCATCTATGGGTGCGTTCCTGCTTGCTGCTGG

TGAAAAAGGTAAGCGTTATGCTCTTCCAAACAGTGAAGTCATGATTCACCAACCACTAGGCGGTGCCCAAGGTCAAGCAA

CAGAAATTGAAATTGCGGCAAAACGAATCCTTTCTTTACGCGATAAACTGAACCAAGTACTGGCTGAACGTACTGGTCAG

CCAATTGAAGTCATTGAGCGCGATACAGATCGTGACAACTTCAAAACAGCGGAAGAAGCACTTCAATACGGACTCATTGA

CAAAGTCTTGACCCGTAATACAGAAGAACAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	93.434	100	0.934
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.539	96.465	0.652
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Lactococcus lactis subsp. cremoris KW2	56.186	97.98	0.551
clpP	Streptococcus pneumoniae Rx1	55.67	97.98	0.545
clpP	Streptococcus pneumoniae D39	55.67	97.98	0.545
clpP	Streptococcus pneumoniae R6	55.67	97.98	0.545
clpP	Streptococcus pneumoniae TIGR4	55.67	97.98	0.545
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Streptococcus mutans UA159	54.639	97.98	0.535
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.124	97.98	0.53

Detailed information NTG0689222