Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CDC37_RS16845 Genome accession   NZ_AP018254
Coordinates   4179168..4179533 (+) Length   121 a.a.
NCBI ID   WP_096623378.1    Uniprot ID   A0A1Z4NM30
Organism   Calothrix sp. NIES-3974     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4174168..4184533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDC37_RS16830 (NIES3974_34460) - 4174499..4175662 (+) 1164 WP_096623374.1 transaldolase -
  CDC37_RS16835 (NIES3974_34470) - 4176216..4177031 (+) 816 WP_231943093.1 tetratricopeptide repeat protein -
  CDC37_RS16840 (NIES3974_34480) - 4177315..4178595 (+) 1281 WP_157780771.1 response regulator -
  CDC37_RS16845 (NIES3974_34490) pilH 4179168..4179533 (+) 366 WP_096623378.1 response regulator Machinery gene
  CDC37_RS16850 (NIES3974_34500) - 4179551..4180129 (+) 579 WP_096626329.1 chemotaxis protein CheW -
  CDC37_RS16855 (NIES3974_34510) - 4180146..4183151 (+) 3006 WP_096623380.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13295.44 Da        Isoelectric Point: 4.8604

>NTDB_id=68917 CDC37_RS16845 WP_096623378.1 4179168..4179533(+) (pilH) [Calothrix sp. NIES-3974]
MSTVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAILTAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=68917 CDC37_RS16845 WP_096623378.1 4179168..4179533(+) (pilH) [Calothrix sp. NIES-3974]
ATGAGTACAGTGCTGATTGTGGAAGATAGTATCGCCCAAAGGGAGATGATTACCGACCTCCTGAAAGCGAGTGGATTAAC
GGTGACACATGCAAGTGATGGAGTCGAAGCGTTAGAAGCAATTTTAACCGCACCTCCAGATTTAGTGGTACTTGATATTG
TCATGCCGAGGATGAATGGTTACGAAGTTTGTCGTCGGCTGAAATCTGACCCAAAAACTCAAAATGTCCCGGTGGTCATG
TGTTCGTCAAAGGGCGAAGAATTTGATCGTTACTGGGGAATGAAACAAGGTGCGGATGCTTATATTGCCAAACCATTCCA
ACCAACGGAATTAGTTGGTACTGTGAAACAACTGCTGCGTGGATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z4NM30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372
  chpA Acinetobacter baumannii strain A118

37.931

95.868

0.364

Multiple sequence alignment