Detailed information    

insolico Bioinformatically predicted

Overview


Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   KK0981_RS04680 Genome accession   NZ_AP017971
Coordinates   870157..870807 (+) Length   216 a.a.
NCBI ID   WP_000387330.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain KK0981     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 865157..875807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KK0981_RS04650 (KK0981_29150) pyrH 865881..866618 (+) 738 WP_000002997.1 UMP kinase -
  KK0981_RS04655 (KK0981_29160) frr 866627..867184 (+) 558 WP_000024409.1 ribosome recycling factor -
  KK0981_RS04660 (KK0981_29170) cvfB 867244..868098 (+) 855 WP_001095450.1 RNA-binding virulence regulatory protein CvfB -
  KK0981_RS04665 (KK0981_29180) - 868107..868322 (+) 216 WP_001232082.1 YozE family protein -
  KK0981_RS04670 (KK0981_29190) - 868408..869412 (+) 1005 WP_000658177.1 PhoH family protein -
  KK0981_RS04675 (KK0981_29200) - 869520..870089 (+) 570 WP_000443770.1 GNAT family N-acetyltransferase -
  KK0981_RS04680 (KK0981_29210) comEA/celA/cilE 870157..870807 (+) 651 WP_000387330.1 ComEA family DNA-binding protein Machinery gene
  KK0981_RS04685 (KK0981_29220) comEC/celB 870791..873031 (+) 2241 WP_000942411.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KK0981_RS04690 (KK0981_29230) - 873075..874028 (-) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  KK0981_RS04695 (KK0981_29240) infC 874515..875045 (+) 531 WP_000848180.1 translation initiation factor IF-3 -
  KK0981_RS04700 (KK0981_29250) rpmI 875078..875278 (+) 201 WP_001125943.1 50S ribosomal protein L35 -
  KK0981_RS04705 (KK0981_29260) rplT 875330..875689 (+) 360 WP_000124836.1 50S ribosomal protein L20 -

Sequence


Protein


Download         Length: 216 a.a.        Molecular weight: 23229.65 Da        Isoelectric Point: 5.5171

>NTDB_id=68678 KK0981_RS04680 WP_000387330.1 870157..870807(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain KK0981]
MEAIIEKIKEYKIIVICTGLGLLVGGFFLLKPAPQTPVKETNLQAEVAAVSKDLVSEKEVNKEEKEEPLEQDLITVDVKG
AVKSPGIYDLPVGSRVNDAVQKAGGLTEQADSKSLNLAQKVSDEALVYVPTKGEEAVSQQTGLGTASSISKEKKVNLNKA
SLEELKQVKGLGGKRAQDIIDHREANGKFKSVDELKKVSGIGGKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=68678 KK0981_RS04680 WP_000387330.1 870157..870807(+) (comEA/celA/cilE) [Streptococcus pneumoniae strain KK0981]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATCGTCATCTGTACTGGTCTGGGCTTGCTTGTAGGAGGATT
TTTCCTGCTAAAACCAGCTCCACAAACACCTGTCAAAGAGACGAATTTGCAGGCTGAAGTCGCAGCTGTTTCCAAGGATT
TGGTATCCGAAAAGGAAGTGAACAAGGAAGAAAAGGAAGAACCCCTTGAACAAGATCTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCGCCAGGGATTTATGACTTGCCTGTAGGTAGTCGAGTCAATGATGCTGTTCAGAAGGCTGGTGGCTTGAC
AGAGCAAGCAGACAGCAAGTCGCTCAATCTAGCTCAGAAAGTTAGTGATGAGGCTCTGGTTTACGTTCCTACTAAGGGAG
AAGAAGCAGTTAGCCAACAGACTGGTTTGGGGACAGCTTCTTCAATAAGCAAGGAAAAGAAGGTCAATCTCAACAAGGCC
AGTCTGGAAGAACTCAAGCAGGTCAAGGGACTGGGAGGAAAACGAGCTCAGGACATTATCGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGACGAGCTCAAGAAGGTCTCTGGCATTGGTGGCAAAACAATAGAAAAGCTTAAAGACTATGTTA
CAGTGGATTAA

Domains


Predicted by InterproScan.

(151-214)

(76-126)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae D39

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae R6

100

100

1

  comEA/celA/cilE Streptococcus pneumoniae TIGR4

97.222

100

0.972

  comEA/celA/cilE Streptococcus mitis NCTC 12261

96.296

100

0.963

  comEA/celA/cilE Streptococcus mitis SK321

90.278

100

0.903

  comEA Lactococcus lactis subsp. cremoris KW2

43.172

100

0.454

  comEA Bacillus subtilis subsp. subtilis str. 168

41.579

87.963

0.366

  comEA Latilactobacillus sakei subsp. sakei 23K

33.476

100

0.361


Multiple sequence alignment