Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OOL18_RS04490 Genome accession   NZ_CP110664
Coordinates   947914..948438 (+) Length   174 a.a.
NCBI ID   WP_039195080.1    Uniprot ID   A0A9X4G3K2
Organism   Actinobacillus pleuropneumoniae strain AP_123     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 942914..953438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOL18_RS04480 - 944584..944796 (+) 213 WP_005597221.1 hypothetical protein -
  OOL18_RS04485 uvrA 944935..947763 (-) 2829 WP_265411072.1 excinuclease ABC subunit UvrA Machinery gene
  OOL18_RS04490 ssb 947914..948438 (+) 525 WP_039195080.1 single-stranded DNA-binding protein Machinery gene
  OOL18_RS04495 - 948648..949547 (-) 900 WP_039709098.1 LysR family transcriptional regulator -
  OOL18_RS04500 - 949659..950648 (+) 990 WP_265411073.1 zinc-dependent alcohol dehydrogenase family protein -
  OOL18_RS04505 - 950731..951129 (-) 399 WP_010907411.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  OOL18_RS04510 - 951202..951816 (+) 615 WP_010907412.1 cation diffusion facilitator family transporter -
  OOL18_RS04515 - 952003..952992 (+) 990 WP_039709551.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19229.01 Da        Isoelectric Point: 4.9839

>NTDB_id=685218 OOL18_RS04490 WP_039195080.1 947914..948438(+) (ssb) [Actinobacillus pleuropneumoniae strain AP_123]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVAGQYLRKGSQVYVEG
RLKTRKWQDQNGQDRYTTEIQGDVLQMLGGRNQGGDFGGNQGGWGNSAPAPQQSYNQGNSGYGYDQTASRPAQQAAKPAQ
AEPPMDNFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=685218 OOL18_RS04490 WP_039195080.1 947914..948438(+) (ssb) [Actinobacillus pleuropneumoniae strain AP_123]
ATGGCAGGTATCAATAAAGTTATCATCGTGGGCAATTTAGGTAACGATCCTGAAATGCGCACCATGCCAAACGGCGAAGC
GGTTGCAAATATTAGCGTAGCAACCAGTGAAAGTTGGACAGATAAAAATACGGGCGAACGCCGTGAAGTAACCGAATGGC
ACCGTATCGTATTCTATCGTCGCCAAGCGGAAGTTGCCGGTCAATACTTACGTAAAGGCTCTCAAGTTTATGTTGAAGGC
CGTTTAAAAACACGTAAATGGCAAGACCAAAACGGTCAAGACCGTTATACCACCGAAATCCAAGGTGACGTTTTACAAAT
GTTAGGCGGGCGTAACCAAGGCGGCGATTTCGGCGGCAACCAAGGCGGTTGGGGAAATTCAGCGCCTGCTCCACAACAAA
GTTACAACCAAGGTAACAGCGGTTACGGCTATGATCAAACAGCAAGCCGCCCAGCACAACAAGCAGCGAAACCTGCTCAA
GCAGAACCACCTATGGATAACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X4G3K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

78.022

100

0.816
  ssb Vibrio cholerae strain A1552

58.757

100

0.598
  ssb Neisseria meningitidis MC58

48

100

0.483
  ssb Neisseria gonorrhoeae MS11

48

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.374
  ssb Latilactobacillus sakei subsp. sakei 23K

34.615

100

0.362