Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EFK13_RS17740 Genome accession   NZ_CP096889
Coordinates   3465192..3465788 (+) Length   198 a.a.
NCBI ID   WP_064816223.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3460192..3470788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS17720 (EFK13_17720) - 3460928..3462277 (-) 1350 WP_129507514.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  EFK13_RS17725 (EFK13_17725) - 3462299..3462967 (-) 669 WP_129507513.1 DUF5819 family protein -
  EFK13_RS17730 (EFK13_17730) - 3463020..3463334 (-) 315 WP_240034940.1 hypothetical protein -
  EFK13_RS17740 (EFK13_17740) clpP 3465192..3465788 (+) 597 WP_064816223.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EFK13_RS17745 (EFK13_17745) pgmB 3465831..3466505 (-) 675 WP_129507511.1 beta-phosphoglucomutase -
  EFK13_RS17750 (EFK13_17750) - 3466502..3468187 (-) 1686 WP_129507510.1 alpha-glucosidase -
  EFK13_RS17755 (EFK13_17755) - 3468180..3470453 (-) 2274 WP_129507786.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21859.11 Da        Isoelectric Point: 4.7048

>NTDB_id=684903 EFK13_RS17740 WP_064816223.1 3465192..3465788(+) (clpP) [Bacillus cabrialesii strain TE3]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT
MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ
PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEDQK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=684903 EFK13_RS17740 WP_064816223.1 3465192..3465788(+) (clpP) [Bacillus cabrialesii strain TE3]
ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA
TCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCGG
AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATTACAGCCGGTATGGCGATCTATGATACC
ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCTATGGGCGCGTTCCTTCTTGCTGCCGG
CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA
CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTTCTTGCTGAACGTACTGGCCAG
CCGCTTGAAGTGATCGAACGCGACACAGACCGCGATAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCTTGATTGA
CAAAATCCTGACTCGCAACACAGAAGACCAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

96.97

100

0.97
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.063

96.465

0.657
  clpP Streptococcus thermophilus LMG 18311

59.067

97.475

0.576
  clpP Streptococcus thermophilus LMD-9

59.067

97.475

0.576
  clpP Streptococcus pneumoniae Rx1

57.732

97.98

0.566
  clpP Streptococcus pneumoniae D39

57.732

97.98

0.566
  clpP Streptococcus pneumoniae R6

57.732

97.98

0.566
  clpP Streptococcus pneumoniae TIGR4

57.732

97.98

0.566
  clpP Lactococcus lactis subsp. cremoris KW2

57.216

97.98

0.561
  clpP Streptococcus pyogenes JRS4

56.477

97.475

0.551
  clpP Streptococcus pyogenes MGAS315

56.477

97.475

0.551
  clpP Streptococcus mutans UA159

55.155

97.98

0.54
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

55.155

97.98

0.54