Detailed information NTG0684402

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA45_RS21920
• Genome accession: NZ_CP110351
• Coordinates: 4714084..4715088 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA45
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4709084..4720088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA45_RS21905 (PALA45_04354)	-	4709567..4710574 (+)	1008	WP_012613731.1	TolB family protein	-
PALA45_RS21910 (PALA45_04355)	mutS	4710700..4713267 (+)	2568	WP_012613730.1	DNA mismatch repair protein MutS	-
PALA45_RS21915 (PALA45_04356)	fdxA	4713334..4713657 (+)	324	WP_003119354.1	ferredoxin FdxA	-
PALA45_RS21920 (PALA45_04357)	rpoS	4714084..4715088 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA45_RS21925 (PALA45_04358)	-	4715193..4716086 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA45_RS21930 (PALA45_04359)	-	4716132..4716767 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA45_RS21935 (PALA45_04360)	surE	4716800..4717549 (-)	750	WP_012613729.1	5'/3'-nucleotidase SurE	-
PALA45_RS21940 (PALA45_04361)	truD	4717537..4718604 (-)	1068	WP_012613728.1	tRNA pseudouridine(13) synthase TruD	-
PALA45_RS21945 (PALA45_04362)	ispF	4718601..4719074 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA45_RS21950 (PALA45_04363)	fghA	4719145..4719996 (-)	852	WP_012613727.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=684402 PALA45_RS21920 WP_003113871.1 4714084..4715088(-) (rpoS) [Pseudomonas aeruginosa strain PALA45]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=684402 PALA45_RS21920 WP_003113871.1 4714084..4715088(-) (rpoS) [Pseudomonas aeruginosa strain PALA45]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653