Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   PALA30_RS18525 Genome accession   NZ_CP110345
Coordinates   3952863..3953504 (-) Length   213 a.a.
NCBI ID   WP_058176887.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA30     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3947863..3958504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA30_RS18510 (PALA30_03651) hupB 3948542..3948814 (-) 273 WP_003087931.1 nucleoid-associated protein HU-beta -
  PALA30_RS18515 (PALA30_03652) lon 3948950..3951346 (-) 2397 WP_003124759.1 endopeptidase La -
  PALA30_RS18520 (PALA30_03653) clpX 3951478..3952758 (-) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  PALA30_RS18525 (PALA30_03654) clpP 3952863..3953504 (-) 642 WP_058176887.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  PALA30_RS18530 (PALA30_03655) tig 3953598..3954908 (-) 1311 WP_003087920.1 trigger factor -
  PALA30_RS18535 (PALA30_03656) parR 3955140..3955847 (+) 708 WP_003087915.1 response regulator transcription factor ParR -
  PALA30_RS18540 (PALA30_03657) parS 3955848..3957134 (+) 1287 WP_003087912.1 sensor histidine kinase ParS -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23488.11 Da        Isoelectric Point: 6.3772

>NTDB_id=683770 PALA30_RS18525 WP_058176887.1 3952863..3953504(-) (clpP) [Pseudomonas aeruginosa strain PALA30]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=683770 PALA30_RS18525 WP_058176887.1 3952863..3953504(-) (clpP) [Pseudomonas aeruginosa strain PALA30]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGCGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGGTCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGTCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.188

90.141

0.606
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.263

89.202

0.582
  clpP Lactococcus lactis subsp. cremoris KW2

52.792

92.488

0.488
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.269

92.488

0.474
  clpP Streptococcus mutans UA159

50

92.019

0.46
  clpP Streptococcus pneumoniae R6

50.256

91.549

0.46
  clpP Streptococcus pneumoniae TIGR4

50.256

91.549

0.46
  clpP Streptococcus pyogenes JRS4

50.256

91.549

0.46
  clpP Streptococcus pyogenes MGAS315

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMG 18311

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMD-9

50.256

91.549

0.46
  clpP Streptococcus pneumoniae Rx1

50.256

91.549

0.46
  clpP Streptococcus pneumoniae D39

50.256

91.549

0.46