Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SNAG_RS06930 Genome accession   NZ_AP017652
Coordinates   1325042..1325632 (-) Length   196 a.a.
NCBI ID   WP_000613463.1    Uniprot ID   F9LYC9
Organism   Streptococcus sp. NPS 308     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320042..1330632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS06905 (SNAG_1348) - 1320733..1321497 (-) 765 WP_001186012.1 ABC transporter ATP-binding protein -
  SNAG_RS06910 (SNAG_1349) - 1321497..1322453 (-) 957 WP_096407831.1 branched-chain amino acid ABC transporter permease -
  SNAG_RS06915 (SNAG_1350) - 1322457..1323326 (-) 870 WP_096407833.1 branched-chain amino acid ABC transporter permease -
  SNAG_RS06920 (SNAG_1351) - 1323446..1324606 (-) 1161 WP_096407836.1 ABC transporter substrate-binding protein -
  SNAG_RS06925 (SNAG_1352) - 1324694..1324963 (-) 270 WP_049536622.1 YlbG family protein -
  SNAG_RS06930 (SNAG_1353) clpP 1325042..1325632 (-) 591 WP_000613463.1 ATP-dependent Clp protease proteolytic subunit ClpP Regulator
  SNAG_RS06935 (SNAG_1354) upp 1325806..1326435 (-) 630 WP_096407838.1 uracil phosphoribosyltransferase -
  SNAG_RS06940 (SNAG_1355) - 1326524..1326991 (-) 468 WP_096407841.1 cytidine/deoxycytidylate deaminase family protein -
  SNAG_RS06945 (SNAG_1356) - 1327010..1327567 (-) 558 WP_007517560.1 TetR/AcrR family transcriptional regulator -
  SNAG_RS06950 (SNAG_1357) - 1327692..1328537 (+) 846 WP_096407843.1 DegV family protein -
  SNAG_RS06955 (SNAG_1358) - 1328595..1329776 (+) 1182 WP_096407846.1 NAD(P)/FAD-dependent oxidoreductase -
  SNAG_RS06960 (SNAG_1359) - 1329790..1330311 (+) 522 WP_096407848.1 DUF1697 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21389.44 Da        Isoelectric Point: 4.5843

>NTDB_id=68358 SNAG_RS06930 WP_000613463.1 1325042..1325632(-) (clpP) [Streptococcus sp. NPS 308]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMN
FIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRKTLEKILADNSGK
SVEQIHADAERDYWMSAQETLEYGFIDEIMANNSLN

Nucleotide


Download         Length: 591 bp        

>NTDB_id=68358 SNAG_RS06930 WP_000613463.1 1325042..1325632(-) (clpP) [Streptococcus sp. NPS 308]
ATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGAGAACGTTCCTATGATATTTACTCTCGTCTTCTGAAAGACCGCAT
CATCATGCTAACAGGTCCCGTTGAAGACAATATGGCCAACTCTGTTATCGCCCAATTGCTTTTCTTGGATGCCCAAGATA
GTACAAAAGATATTTACCTTTATGTCAACACACCTGGAGGATCTGTTTCAGCTGGTCTGGCAATCGTTGATACCATGAAC
TTTATCAAGGCAGATGTTCAAACCATCGTGATGGGAATGGCTGCATCCATGGGGACTGTCATTGCATCAAGTGGCGCAAA
AGGCAAACGTTTCATGCTTCCAAATGCAGAGTACATGATTCACCAACCAATGGGTGGAACCGGTGGTGGTACCCAACAGA
CAGATATGGCAATCGCAGCAGAACACTTGCTCAAAACTCGTAAGACCTTGGAAAAAATCCTTGCAGATAACTCTGGTAAA
TCAGTTGAGCAAATTCATGCAGACGCGGAACGTGATTACTGGATGAGTGCCCAAGAAACGCTTGAATATGGCTTTATTGA
TGAAATCATGGCTAACAATTCTTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9LYC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

96.429

100

0.964
  clpP Streptococcus pneumoniae D39

96.429

100

0.964
  clpP Streptococcus pneumoniae R6

96.429

100

0.964
  clpP Streptococcus pneumoniae TIGR4

96.429

100

0.964
  clpP Streptococcus pyogenes MGAS315

92.821

99.49

0.923
  clpP Streptococcus pyogenes JRS4

92.821

99.49

0.923
  clpP Streptococcus thermophilus LMD-9

90.769

99.49

0.903
  clpP Streptococcus thermophilus LMG 18311

90.769

99.49

0.903
  clpP Streptococcus mutans UA159

89.231

99.49

0.888
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

87.179

99.49

0.867
  clpP Lactococcus lactis subsp. cremoris KW2

86.667

99.49

0.862
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.031

98.469

0.571
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566

Multiple sequence alignment