NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	M0696_RS17485	Genome accession	NZ_CP096590
Coordinates	3434875..3435471 (+)	Length	198 a.a.
NCBI ID	WP_003219849.1	Uniprot ID	A0A9W5LL57
Organism	Bacillus rugosus strain A78.1
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3429875..3440471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0696_RS17450 (M0696_17450)	-	3429985..3430701 (+)	717	WP_072565311.1	LytTR family DNA-binding domain-containing protein	-
M0696_RS17455 (M0696_17455)	aspP	3430853..3432415 (+)	1563	WP_166848069.1	aspartate/proton symporter AspP	-
M0696_RS17460 (M0696_17460)	-	3432510..3433094 (+)	585	WP_222142078.1	TetR family transcriptional regulator	-
M0696_RS17465 (M0696_17465)	-	3433177..3433512 (+)	336	WP_166848063.1	SMR family transporter	-
M0696_RS17470 (M0696_17470)	-	3433512..3433826 (+)	315	WP_166848060.1	multidrug efflux SMR transporter	-
M0696_RS17475 (M0696_17475)	-	3433868..3434380 (-)	513	WP_166848057.1	DUF3231 family protein	-
M0696_RS17485 (M0696_17485)	clpP	3434875..3435471 (+)	597	WP_003219849.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
M0696_RS17490 (M0696_17490)	pgmB	3435539..3436213 (-)	675	WP_248602209.1	beta-phosphoglucomutase	-
M0696_RS17495 (M0696_17495)	malL	3436210..3437895 (-)	1686	WP_248602210.1	oligo-1,6-glucosidase	-
M0696_RS17500 (M0696_17500)	-	3437888..3440161 (-)	2274	WP_248602211.1	glycoside hydrolase family 65 protein	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21873.14 Da Isoelectric Point: 4.7114

                                >NTDB_id=681982 M0696_RS17485 WP_003219849.1 3434875..3435471(+) (clpP) [Bacillus rugosus strain A78.1]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSAEEALEYGLIDKILTRNTEEQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=681982 M0696_RS17485 WP_003219849.1 3434875..3435471(+) (clpP) [Bacillus rugosus strain A78.1]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGGGAAAGAGCGTATGACATTTATTCTCGTCTATTAAAGGA

CCGTATCATCATGCTTGGATCTGCGATTGATGACAACGTTGCGAACTCCATCGTGTCACAGCTTTTATTCTTAGAAGCAG

AAGACCCTGAAAAAGATATTTCTATTTACATCAACAGCCCGGGCGGCTCTATCACAGCCGGTATGGCGATCTATGATACC

ATGCAGTTTATTAAGCCGAAGGTATCTACAATTTGTATCGGTATGGCTGCATCAATGGGTGCGTTCCTGCTTGCTGCCGG

CGAAAAAGGCAAACGCTATGCGCTTCCAAACAGTGAAGTCATGATTCACCAGCCTCTTGGCGGTGCGCAAGGTCAGGCGA

CAGAAATTGAAATTGCCGCGAAACGCATTCTCTTGCTTCGCGACAAATTAAACAAAGTTCTTGCTGAACGTACTGGCCAG

CCGCTTGAAGTGATCGAACGCGACACAGATCGCGACAACTTCAAGTCTGCTGAAGAAGCGCTTGAATACGGCCTGATTGA

CAAAATCCTGACTCGCAACACAGAAGAACAAAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	96.465	100	0.965
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.063	96.465	0.657
clpP	Streptococcus thermophilus LMG 18311	59.067	97.475	0.576
clpP	Streptococcus thermophilus LMD-9	59.067	97.475	0.576
clpP	Streptococcus pneumoniae Rx1	57.732	97.98	0.566
clpP	Streptococcus pneumoniae D39	57.732	97.98	0.566
clpP	Streptococcus pneumoniae R6	57.732	97.98	0.566
clpP	Streptococcus pneumoniae TIGR4	57.732	97.98	0.566
clpP	Lactococcus lactis subsp. cremoris KW2	57.216	97.98	0.561
clpP	Streptococcus pyogenes JRS4	56.477	97.475	0.551
clpP	Streptococcus pyogenes MGAS315	56.477	97.475	0.551
clpP	Streptococcus mutans UA159	55.155	97.98	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.155	97.98	0.54

Detailed information NTG0681982