Detailed information NTG0680414

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: PALA32_RS17205
• Genome accession: NZ_CP109844
• Coordinates: 3733909..3734550 (-)
• Length: 213 a.a.
• NCBI ID: WP_023131162.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA32
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3728909..3739550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA32_RS17190 (PALA32_03402)	hupB	3729588..3729860 (-)	273	WP_003087931.1	nucleoid-associated protein HU-beta	-
PALA32_RS17195 (PALA32_03403)	lon	3729996..3732392 (-)	2397	WP_003087926.1	endopeptidase La	-
PALA32_RS17200 (PALA32_03404)	clpX	3732524..3733804 (-)	1281	WP_003087924.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
PALA32_RS17205 (PALA32_03405)	clpP	3733909..3734550 (-)	642	WP_023131162.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
PALA32_RS17210 (PALA32_03406)	tig	3734644..3735954 (-)	1311	WP_003087920.1	trigger factor	-
PALA32_RS17215 (PALA32_03407)	parR	3736186..3736893 (+)	708	WP_003098126.1	response regulator transcription factor ParR	-
PALA32_RS17220 (PALA32_03408)	parS	3736894..3738180 (+)	1287	WP_003087912.1	sensor histidine kinase ParS	-

Sequence

Protein

• Length: 213 a.a.
• Molecular weight: 23492.10 Da
• Isoelectric Point: 6.3772

>NTDB_id=680414 PALA32_RS17205 WP_023131162.1 3733909..3734550(-) (clpP) [Pseudomonas aeruginosa strain PALA32]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLSHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMTQRDLAV

Nucleotide

• Length: 642 bp

>NTDB_id=680414 PALA32_RS17205 WP_023131162.1 3733909..3734550(-) (clpP) [Pseudomonas aeruginosa strain PALA32]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGAGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGTTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGCTACTGCCTGTCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGACCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (29-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.188	90.141	0.606
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	65.263	89.202	0.582
clpP	Lactococcus lactis subsp. cremoris KW2	52.792	92.488	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.269	92.488	0.474
clpP	Streptococcus mutans UA159	50	92.019	0.46
clpP	Streptococcus pneumoniae R6	50.256	91.549	0.46
clpP	Streptococcus pneumoniae TIGR4	50.256	91.549	0.46
clpP	Streptococcus pyogenes JRS4	50.256	91.549	0.46
clpP	Streptococcus pyogenes MGAS315	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMG 18311	50.256	91.549	0.46
clpP	Streptococcus thermophilus LMD-9	50.256	91.549	0.46
clpP	Streptococcus pneumoniae Rx1	50.256	91.549	0.46
clpP	Streptococcus pneumoniae D39	50.256	91.549	0.46