Detailed information NTG0679671

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: M0D43_RS16665
• Genome accession: NZ_CP096142
• Coordinates: 3885518..3886777 (-)
• Length: 419 a.a.
• NCBI ID: WP_252165099.1
• Uniprot ID: A0A9Q9J1Z4
• Organism: Xanthomonas prunicola strain CIX249
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3880518..3891777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M0D43_RS16655 (M0D43_16635)	coaE	3884026..3884634 (-)	609	WP_101361876.1	dephospho-CoA kinase	-
M0D43_RS16660 (M0D43_16640)	-	3884648..3885511 (-)	864	WP_252162272.1	A24 family peptidase	-
M0D43_RS16665 (M0D43_16645)	pilC	3885518..3886777 (-)	1260	WP_252165099.1	type II secretion system F family protein	Machinery gene
M0D43_RS16670 (M0D43_16650)	pilA	3887132..3887557 (+)	426	WP_252162273.1	pilin	Machinery gene
M0D43_RS16675 (M0D43_16655)	-	3887692..3889281 (+)	1590	WP_260807378.1	phosphoethanolamine transferase	-
M0D43_RS16680 (M0D43_16660)	-	3889292..3889921 (+)	630	WP_252165100.1	hypothetical protein	-
M0D43_RS16685 (M0D43_16665)	-	3889891..3891417 (+)	1527	WP_313905434.1	hypothetical protein	-

Sequence

Protein

• Length: 419 a.a.
• Molecular weight: 46018.51 Da
• Isoelectric Point: 10.2301

>NTDB_id=679671 M0D43_RS16665 WP_252165099.1 3885518..3886777(-) (pilC) [Xanthomonas prunicola strain CIX249]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQVRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKGFGAELPAFTQLLVNASRFMVSYWWL
MLVVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide

• Length: 1260 bp

>NTDB_id=679671 M0D43_RS16665 WP_252165099.1 3885518..3886777(-) (pilC) [Xanthomonas prunicola strain CIX249]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAAGGAGAACAGACAGCCCGCAACGCAAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGCATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCCAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATCGGCGA
GGGACACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAAGTCAGGACTGACATTGAGGGCGGATCGTCGCTCTATGAGT
CAATCAGCAAACATCCGGTCCAATTTGACGAACTCTACCGCAATCTTGTTCGCGCGGGCGAAGGCGCTGGCGTATTGGAG
ACAGTCCTCGAAACGGTCGCCACCTACAAAGAAAACATTGAAGCCCTCAAGGGCAAGATCAAAAAGGCGATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAAGAAGTATTCA
AGGGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTGGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAG
GCTGTTTTCCGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCTCA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAACAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (84-207)

• Type II secretion system (T2SS), protein F (T2SSF) (288-410)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Legionella pneumophila strain ERS1305867	53.202	96.897	0.516
pilC	Pseudomonas stutzeri DSM 10701	53.788	94.511	0.508
pilC	Acinetobacter baylyi ADP1	50.617	96.659	0.489
pilC	Acinetobacter baumannii D1279779	50.123	96.659	0.484
pilG	Neisseria gonorrhoeae MS11	43.108	95.227	0.411
pilG	Neisseria meningitidis 44/76-A	42.5	95.465	0.406
pilC	Vibrio cholerae strain A1552	40.5	95.465	0.387
pilC	Vibrio campbellii strain DS40M4	39.5	95.465	0.377