Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG571_RS18925 Genome accession   NZ_CP109575
Coordinates   4208882..4210294 (+) Length   470 a.a.
NCBI ID   WP_124719461.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01369     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4203882..4215294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG571_RS18910 (OG571_18880) - 4204797..4205750 (-) 954 WP_266690189.1 Ppx/GppA phosphatase family protein -
  OG571_RS18915 (OG571_18885) - 4205791..4206660 (+) 870 WP_266690188.1 hypothetical protein -
  OG571_RS18920 (OG571_18890) - 4206770..4208686 (-) 1917 WP_266690187.1 hypothetical protein -
  OG571_RS18925 (OG571_18895) radA/sms 4208882..4210294 (+) 1413 WP_124719461.1 DNA repair protein RadA Machinery gene
  OG571_RS18930 (OG571_18900) disA 4210375..4211499 (+) 1125 WP_266690186.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG571_RS18935 (OG571_18905) - 4211605..4212417 (-) 813 WP_266690185.1 hypothetical protein -
  OG571_RS18940 (OG571_18910) - 4212626..4213273 (+) 648 WP_266690183.1 phosphatase PAP2 family protein -
  OG571_RS18945 (OG571_18915) - 4213418..4214320 (+) 903 WP_259934116.1 A/G-specific adenine glycosylase -
  OG571_RS18950 (OG571_18920) - 4214499..4215113 (+) 615 WP_124719463.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49507.63 Da        Isoelectric Point: 8.4954

>NTDB_id=679004 OG571_RS18925 WP_124719461.1 4208882..4210294(+) (radA/sms) [Streptomyces sp. NBC_01369]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARSTGVGE
LDRVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHRTLYVTAEESASQVRLRADRIRAINDHLYLAAETDLSAV
LGHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRITSLGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVANMGDALRVLPRRSRAQAPQEESARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=679004 OG571_RS18925 WP_124719461.1 4208882..4210294(+) (radA/sms) [Streptomyces sp. NBC_01369]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTACCGCTGCACCGAATGCGGCTGGACGACCGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTGCGGACCACCGCGGCCG
GCCGGGTCAGCACCGCCGCGCTCCCCATCGGCCAGGTCGACAGCAGGCAGGCCACCGCCCGGTCCACCGGCGTCGGTGAG
CTGGACCGGGTGCTCGGCGGCGGCCTCGTGCCGGGTGCCGTGGTGCTCGTCGCGGGCGAGCCCGGCGTCGGCAAGTCGAC
GCTGCTGCTGGACGTCGCCGCCAAGGCCGCGAGCGACGAGCACCGCACGCTCTACGTCACCGCCGAGGAGTCCGCGAGCC
AGGTGCGGCTGCGCGCCGACCGGATCCGGGCGATCAACGACCATCTGTACCTGGCCGCCGAGACCGACCTGTCCGCGGTC
CTCGGCCATCTCGACGCCGTCAAGCCCTCGCTGCTCATCCTCGACTCCGTACAGACCGTCGCCTCGCCCGAGATCGAGGG
GGCGCCGGGCGGCATGGCGCAGGTCCGGGAGGTCGCCGGCGCGCTCATCCGGGCCTCCAAGGAGCGCGGCATGTCGACGC
TCCTGGTCGGCCACGTCACCAAGGAGGGGGCGATCGCGGGCCCCCGGCTGCTGGAGCACCTCGTCGACGTGGTGCTCTCC
TTCGAGGGCGACCGCCATGCCCGCCTGCGGCTCGTACGGGGCGTCAAGAACAGGTACGGCGCGACCGACGAGGTGGGCTG
CTTCGAGCTGCACGACGAGGGCATCACCGGCCTCGCCGACCCCTCCGGGCTGTTCCTCACCAGGCGCGACGAGCCCGTGC
CCGGCACCTGCCTGACCGTCACCCTGGAGGGCAAGCGGCCGCTCGTCGCCGAAGTGCAGGCGCTGACGGTCGATTCCCAG
ATCCCTTCGCCCCGGCGCACCACCTCCGGCCTGGAGACGTCCCGGGTCTCGATGATGCTCGCGGTCCTGGAGCAGCGCGG
CCGGATCACCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGTGTGAAGCTCTCCGAGCCCGCCGCGGACC
TCGCGGTCGCGCTGGCGCTGGCCAGTGCCGCGAGCGACACCCCCCTGCCGAAGAACCTGGTGGCGATCGGCGAGGTGGGC
CTCGCGGGCGAGGTCAGAAGGGTCACGGGGGTCCAGCGCAGGCTGGCCGAGGCGCACCGCCTGGGCTTCACGCACGCCCT
GGTTCCGACCGATCCGGGCAAGGTCCCGGCCGGTATGAAGGTCACAGAAGTCGCCAACATGGGCGATGCGCTGAGAGTCC
TCCCGCGCCGGTCTCGTGCACAGGCCCCCCAGGAGGAGAGCGCACGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

AAA domain (AAA_25)

(84-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

43.046

96.383

0.415
  radA Streptococcus pneumoniae D39

43.046

96.383

0.415
  radA Streptococcus pneumoniae R6

43.046

96.383

0.415
  radA Streptococcus pneumoniae TIGR4

43.046

96.383

0.415
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.522

91.277

0.406