Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MYF86_RS07960 Genome accession   NZ_CP095841
Coordinates   1669404..1669724 (-) Length   106 a.a.
NCBI ID   WP_019445026.1    Uniprot ID   -
Organism   Aeromonas veronii strain AV040     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1664404..1674724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYF86_RS07940 (MYF86_07940) - 1664801..1665499 (-) 699 WP_103250459.1 DnaT-like ssDNA-binding domain-containing protein -
  MYF86_RS07945 (MYF86_07945) - 1665740..1666711 (+) 972 WP_005358239.1 response regulator -
  MYF86_RS07950 (MYF86_07950) - 1666786..1668183 (-) 1398 WP_021231963.1 peptide MFS transporter -
  MYF86_RS07955 (MYF86_07955) galU 1668397..1669308 (-) 912 WP_100654493.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MYF86_RS07960 (MYF86_07960) comEA/comE1 1669404..1669724 (-) 321 WP_019445026.1 ComEA family DNA-binding protein Machinery gene
  MYF86_RS07965 (MYF86_07965) pta 1670102..1672282 (-) 2181 WP_005339119.1 phosphate acetyltransferase -
  MYF86_RS07970 (MYF86_07970) - 1672338..1673540 (-) 1203 WP_005349210.1 acetate kinase -
  MYF86_RS07975 (MYF86_07975) yfbV 1673845..1674285 (+) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11330.32 Da        Isoelectric Point: 9.6564

>NTDB_id=678697 MYF86_RS07960 WP_019445026.1 1669404..1669724(-) (comEA/comE1) [Aeromonas veronii strain AV040]
MLMKKLSAIMLLACLPLFSQPVLAADKAAPKQTTTTEVAKETGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=678697 MYF86_RS07960 WP_019445026.1 1669404..1669724(-) (comEA/comE1) [Aeromonas veronii strain AV040]
ATGCTGATGAAGAAGCTCTCTGCAATCATGTTGCTGGCCTGCTTGCCACTGTTCAGCCAACCTGTGCTGGCCGCAGATAA
GGCAGCACCCAAGCAAACAACCACGACCGAGGTCGCCAAGGAGACCGGCAAGCTGAACATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(43-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

46.602

97.17

0.453
  comEA Vibrio cholerae C6706

46.602

97.17

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comE1/comEA Haemophilus influenzae Rd KW20

66.129

58.491

0.387
  comEA Legionella pneumophila strain ERS1305867

40.404

93.396

0.377
  comEA Legionella pneumophila str. Paris

40.404

93.396

0.377
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368