Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG741_RS13280 Genome accession   NZ_CP109530
Coordinates   2894300..2896222 (+) Length   640 a.a.
NCBI ID   WP_405597337.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01410     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2889300..2901222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG741_RS13265 (OG741_13250) - 2890697..2890996 (+) 300 WP_405597330.1 YtxH domain-containing protein -
  OG741_RS13270 (OG741_13255) - 2891033..2892478 (+) 1446 WP_405597333.1 FGGY family carbohydrate kinase -
  OG741_RS13275 (OG741_13260) rcrP 2892570..2894303 (+) 1734 WP_405597335.1 ABC transporter ATP-binding protein Regulator
  OG741_RS13280 (OG741_13265) rcrQ 2894300..2896222 (+) 1923 WP_405597337.1 ABC transporter ATP-binding protein Regulator
  OG741_RS13285 (OG741_13270) - 2896498..2897748 (-) 1251 Protein_2634 RNA polymerase sigma factor -
  OG741_RS13290 (OG741_13275) dnaG 2897855..2899759 (-) 1905 WP_405597339.1 DNA primase -
  OG741_RS13295 (OG741_13280) - 2899795..2901057 (-) 1263 WP_405597341.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69377.67 Da        Isoelectric Point: 5.0597

>NTDB_id=678318 OG741_RS13280 WP_405597337.1 2894300..2896222(+) (rcrQ) [Streptomyces sp. NBC_01410]
MSGPGGRMMMGPVERSMDFKGSGKRLLRQLAPERMTLWVMLAAAVLSVAFNVVGPWILGRATDLVFAGVVGRDMDAGTSK
EQAIDGLRDKDQGGLADLLSGVDFTPGDGIDFTAVGHVLLAALAVYVAAGLLMLVATRLSIRVINRTLYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVVVATKVGKRS
QPHFVQQWKTTGKLNAHIEEMYTGHALVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADAPSAERPERPQGRVSLEKV
AFRYEPDKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRISLDGVDVARMSREELRSQIGMVLQDTWL
FGGTIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGTHEGLLAAEGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=678318 OG741_RS13280 WP_405597337.1 2894300..2896222(+) (rcrQ) [Streptomyces sp. NBC_01410]
ATGAGCGGGCCGGGCGGACGGATGATGATGGGCCCGGTCGAGCGGTCCATGGACTTCAAGGGTTCGGGCAAACGGCTGCT
GCGGCAGCTCGCGCCGGAGCGTATGACGCTGTGGGTGATGCTCGCGGCGGCGGTGCTGAGCGTCGCGTTCAACGTGGTCG
GCCCGTGGATTCTGGGCCGGGCGACCGACCTGGTCTTCGCCGGGGTCGTCGGCCGTGACATGGACGCGGGGACCAGCAAG
GAACAGGCGATCGACGGCCTGCGGGACAAGGACCAGGGCGGGCTCGCGGACCTGCTGTCCGGCGTGGACTTCACGCCCGG
CGACGGCATCGACTTCACCGCCGTCGGCCATGTGCTGCTGGCGGCGCTCGCGGTGTACGTGGCCGCGGGGCTGCTGATGC
TGGTGGCGACCCGGCTGTCGATCAGAGTGATCAACCGGACCCTGTACCGGATGCGCGAGGACGTACAGGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACATCTC
GCAGACCCTGCAGCAGACGATGGGCCAGCTGATCAACTCGCTGCTGACCATCGTGGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTCGCGCTGGTGGCACTGGTGACCGTGCCGGTGTCGGTCGTCGTCGCGACGAAGGTCGGCAAGCGCTCG
CAGCCGCACTTCGTGCAGCAGTGGAAGACCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGTCATGCGCT
GGTGAAGGTCTTCGGGCGGCAGGACGAGTCCGCCAGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGGGATTCA
AGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTATGTGCTGGTGGCCGTGGTC
GGCGGGCTGCGGGTCGCGTCCGGCGCGCTGTCGATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTGACACAGGTCGCCTCGATGGCGAACCTCGTGCAGTCGGGCGTCGCGTCCGCCGAGCGGATCTTCGAACTCCTCG
ACGCGGAGGAGCAGGAGGCGGACGCGCCGTCCGCCGAGCGGCCCGAACGCCCGCAGGGCCGGGTCTCCCTGGAGAAGGTC
GCCTTCCGCTACGAGCCGGACAAGCCGCTCATCGAGGATCTGTCGCTGAGCGTGGAGCCGGGTCACACGGTCGCGATCGT
CGGCCCGACGGGCGCGGGCAAGACGACCCTGGTGAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGGCGGATCAGCC
TCGACGGGGTCGACGTCGCCAGGATGTCCCGCGAGGAACTGCGGTCCCAGATCGGGATGGTGCTCCAGGACACGTGGCTG
TTCGGCGGCACGATCGCGGACAACATCGCGTACGGCGCCTCCCGGGAGGTGACCCGCGAGGAGATCGAGGAGGCGGCGCG
CGCCGCGCACGCCGACCGGTTCATCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCTCGGGCGTGA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACC
AGCTCGGTGGACACCCGTACGGAGGTACTCATCCAGAAGGCGATGGCGCGGCTCGCGCACGGCCGCACGAGCTTCGTCAT
CGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGGGCGATCGTCGAACAGGGCACGC
ATGAGGGGCTGTTGGCGGCGGAGGGGGCGTATGCGCGGCTGTATGCGGCGCAGTTCGCCCAGGCGGTGGTGGAGGTGGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(38-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.194

96.406

0.387