Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG232_RS12205 Genome accession   NZ_CP109529
Coordinates   2751904..2752521 (-) Length   205 a.a.
NCBI ID   WP_323183829.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01411     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746904..2757521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG232_RS12190 (OG232_12185) - 2748546..2749598 (+) 1053 WP_405751147.1 hypothetical protein -
  OG232_RS12195 (OG232_12190) clpX 2749719..2751011 (-) 1293 WP_266857025.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG232_RS12200 (OG232_12195) clpP 2751168..2751851 (-) 684 WP_164261167.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG232_RS12205 (OG232_12200) clpP 2751904..2752521 (-) 618 WP_323183829.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG232_RS12210 (OG232_12205) tig 2752804..2754207 (-) 1404 WP_328376948.1 trigger factor -
  OG232_RS12225 (OG232_12220) - 2754813..2755007 (-) 195 WP_164261160.1 hypothetical protein -
  OG232_RS12230 (OG232_12225) - 2755506..2756693 (+) 1188 WP_328376949.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21606.50 Da        Isoelectric Point: 4.5407

>NTDB_id=678245 OG232_RS12205 WP_323183829.1 2751904..2752521(-) (clpP) [Streptomyces sp. NBC_01411]
MTNLMPYAAGEPNIGGGLGDQVYNRLLGERIIFLGQQVDDEIANKITAQLLLLAADPEKDIFLYINSPGGSVTAGMAVYD
TMQYIPNDVVTIGMGLAASMGQFLLTGGTAGKRFALPNTDILMHQGSAGLGGTASDIKIQAQQLLRTKKRMAEITARHSG
QTVDAIIRDGDRDRWYTADEAKEYGLIDEIISSASGVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=678245 OG232_RS12205 WP_323183829.1 2751904..2752521(-) (clpP) [Streptomyces sp. NBC_01411]
GTGACGAATCTGATGCCTTACGCCGCCGGCGAGCCCAACATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCT
CGGTGAGCGGATCATCTTCCTCGGCCAGCAGGTCGACGACGAGATCGCCAACAAGATCACCGCGCAGCTGCTCCTCCTTG
CCGCCGATCCGGAAAAGGACATCTTCCTTTACATCAACAGCCCCGGCGGCTCGGTGACGGCAGGCATGGCGGTCTACGAC
ACCATGCAGTACATCCCGAACGACGTGGTCACCATCGGTATGGGCCTCGCGGCCTCGATGGGCCAGTTCCTGCTGACCGG
TGGCACCGCCGGCAAGCGCTTCGCGCTCCCCAACACCGACATCCTGATGCACCAGGGCTCGGCCGGTCTCGGCGGCACCG
CATCGGACATCAAGATCCAGGCCCAGCAGCTGCTCCGTACGAAGAAGCGCATGGCCGAGATCACCGCCCGGCACTCCGGC
CAGACCGTCGACGCGATCATCCGCGACGGTGACCGCGACCGCTGGTACACGGCGGATGAGGCCAAGGAGTACGGCCTCAT
CGACGAGATCATCTCCTCCGCCTCGGGCGTTCCGGGCGGCGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.832

93.171

0.483
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50.521

93.659

0.473
  clpP Lactococcus lactis subsp. cremoris KW2

51.977

86.341

0.449
  clpP Streptococcus mutans UA159

52

85.366

0.444
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.412

86.341

0.444
  clpP Streptococcus pneumoniae TIGR4

48.588

86.341

0.42
  clpP Streptococcus pneumoniae Rx1

48.588

86.341

0.42
  clpP Streptococcus pneumoniae D39

48.588

86.341

0.42
  clpP Streptococcus pneumoniae R6

48.588

86.341

0.42
  clpP Streptococcus pyogenes JRS4

49.143

85.366

0.42
  clpP Streptococcus pyogenes MGAS315

49.143

85.366

0.42
  clpP Streptococcus thermophilus LMG 18311

49.143

85.366

0.42
  clpP Streptococcus thermophilus LMD-9

49.143

85.366

0.42