Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG290_RS10755 Genome accession   NZ_CP109506
Coordinates   2460111..2460794 (-) Length   227 a.a.
NCBI ID   WP_018518168.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01423     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2455111..2465794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG290_RS10745 (OG290_10775) - 2457576..2458577 (+) 1002 WP_329025188.1 hypothetical protein -
  OG290_RS10750 (OG290_10780) clpX 2458656..2459954 (-) 1299 WP_018103185.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG290_RS10755 (OG290_10785) clpP 2460111..2460794 (-) 684 WP_018518168.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG290_RS10760 (OG290_10790) - 2460873..2461478 (-) 606 WP_018518167.1 ATP-dependent Clp protease proteolytic subunit -
  OG290_RS10765 (OG290_10795) tig 2461745..2463127 (-) 1383 WP_329025190.1 trigger factor -
  OG290_RS10780 (OG290_10810) - 2463667..2463861 (-) 195 WP_093708837.1 hypothetical protein -
  OG290_RS10785 (OG290_10815) - 2464351..2465502 (+) 1152 WP_329025192.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24806.19 Da        Isoelectric Point: 4.6814

>NTDB_id=678019 OG290_RS10755 WP_018518168.1 2460111..2460794(-) (clpP) [Streptomyces sp. NBC_01423]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEELLAKHSTTPIEKIRDDIERDKILTAEDSLAYGLVDQIVSTRKSAAGALA

Nucleotide


Download         Length: 684 bp        

>NTDB_id=678019 OG290_RS10755 WP_018518168.1 2460111..2460794(-) (clpP) [Streptomyces sp. NBC_01423]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACGGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCCATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTGCTGCTGGCCGCGGGCACCC
CGGGCAAGCGCATGGCGCTCCCGAACGCCCGCGTCCTGATCCACCAGCCGTCCTCGCAGACCGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGCATGCGGACCCAGCTGGAGGAGCTGCTCGCCAAGCACTCCACCACGCC
GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACTCCCTCGCCTACGGTCTCGTCGACC
AGATCGTGTCGACCCGCAAGAGCGCGGCCGGAGCGCTCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.619

83.26

0.396
  clpP Streptococcus thermophilus LMD-9

44.845

85.463

0.383
  clpP Streptococcus pyogenes JRS4

44.845

85.463

0.383
  clpP Streptococcus pyogenes MGAS315

44.845

85.463

0.383
  clpP Streptococcus thermophilus LMG 18311

44.845

85.463

0.383
  clpP Streptococcus mutans UA159

45.263

83.7

0.379
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pneumoniae R6

44.271

84.581

0.374
  clpP Streptococcus pneumoniae TIGR4

44.271

84.581

0.374
  clpP Streptococcus pneumoniae D39

44.271

84.581

0.374
  clpP Streptococcus pneumoniae Rx1

44.271

84.581

0.374
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37