NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	MW696_RS13085	Genome accession	NZ_CP095476
Coordinates	2531893..2532465 (-)	Length	190 a.a.
NCBI ID	WP_247069688.1	Uniprot ID	-
Organism	Bacillus glycinifermentans strain MGMM1
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2526893..2537465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MW696_RS13065 (MW696_13070)	-	2527597..2528895 (+)	1299	WP_048406821.1	hemolysin family protein	-
MW696_RS13070 (MW696_13075)	-	2529051..2530262 (+)	1212	WP_048354089.1	ammonium transporter	-
MW696_RS13075 (MW696_13080)	-	2530281..2530631 (+)	351	WP_046130347.1	P-II family nitrogen regulator	-
MW696_RS13080 (MW696_13085)	-	2531101..2531493 (+)	393	WP_247069686.1	hypothetical protein	-
MW696_RS13085 (MW696_13090)	clpP	2531893..2532465 (-)	573	WP_247069688.1	ATP-dependent Clp protease proteolytic subunit	Regulator
MW696_RS13090 (MW696_13095)	-	2532479..2533087 (-)	609	WP_247069691.1	sigma-70 family RNA polymerase sigma factor	-
MW696_RS13095 (MW696_13100)	-	2533219..2534082 (-)	864	WP_247069692.1	M23 family metallopeptidase	-
MW696_RS13100 (MW696_13105)	-	2534227..2534745 (+)	519	WP_247069695.1	GNAT family N-acetyltransferase	-
MW696_RS13105 (MW696_13110)	-	2534779..2535222 (-)	444	WP_247069697.1	YwnF family protein	-
MW696_RS13110 (MW696_13115)	cls	2535460..2536908 (+)	1449	WP_247073254.1	cardiolipin synthase	-

Sequence

Protein

Download Length: 190 a.a. Molecular weight: 21107.31 Da Isoelectric Point: 5.1180

                                >NTDB_id=677169 MW696_RS13085 WP_247069688.1 2531893..2532465(-) (clpP) [Bacillus glycinifermentans strain MGMM1]

MNTIPYVIEKTAAGERSYDIFSRLLKDRIIMIGSEFTDDLANRVTAQLLFLSAEDNEKDISVYINSPGGSTSAGYAILDT

MEYVKPDIRTICVGMAASMGAIILAGGTKGKRFALKNSEIMIHQPLGGVKGQATDMEISARRIIKLKEKIQQFFHERTGQ

PLEKLKEDMERDYFMDAEEAKAYGIVDAVL

Nucleotide

Download Length: 573 bp

                                >NTDB_id=677169 MW696_RS13085 WP_247069688.1 2531893..2532465(-) (clpP) [Bacillus glycinifermentans strain MGMM1]

ATGAACACCATTCCTTATGTTATTGAAAAGACAGCGGCAGGAGAAAGATCCTACGATATTTTTTCAAGGCTTTTGAAAGA

CCGCATCATAATGATCGGCTCTGAATTTACGGACGATCTCGCCAATCGCGTCACCGCCCAGCTGCTGTTTTTGTCGGCGG

AGGACAATGAAAAGGACATTTCGGTCTATATCAACAGCCCCGGCGGATCAACCTCTGCCGGATATGCGATTTTAGATACG

ATGGAGTACGTGAAGCCTGATATTCGCACGATCTGCGTCGGGATGGCTGCTTCGATGGGGGCGATCATCCTTGCGGGCGG

AACGAAAGGAAAGCGGTTTGCCCTTAAAAACAGCGAAATCATGATCCACCAGCCGCTCGGCGGCGTCAAAGGACAGGCGA

CGGACATGGAGATTTCCGCAAGGCGGATCATCAAACTGAAGGAGAAAATCCAGCAGTTCTTCCATGAACGGACGGGTCAG

CCGCTTGAAAAACTAAAAGAAGACATGGAACGCGATTATTTTATGGATGCCGAGGAAGCGAAGGCTTACGGTATTGTCGA

TGCAGTTTTGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	63.158	100	0.632
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	60.963	98.421	0.6
clpP	Streptococcus thermophilus LMG 18311	55.026	99.474	0.547
clpP	Streptococcus thermophilus LMD-9	55.026	99.474	0.547
clpP	Streptococcus pyogenes MGAS315	53.968	99.474	0.537
clpP	Streptococcus pyogenes JRS4	53.968	99.474	0.537
clpP	Streptococcus pneumoniae D39	53.439	99.474	0.532
clpP	Streptococcus pneumoniae Rx1	53.439	99.474	0.532
clpP	Streptococcus pneumoniae R6	53.439	99.474	0.532
clpP	Streptococcus pneumoniae TIGR4	53.439	99.474	0.532
clpP	Streptococcus mutans UA159	52.91	99.474	0.526
clpP	Lactococcus lactis subsp. cremoris KW2	52.381	99.474	0.521
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	51.852	99.474	0.516

Detailed information NTG0677169