Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG318_RS34260 Genome accession   NZ_CP109438
Coordinates   7454787..7455467 (+) Length   226 a.a.
NCBI ID   WP_266624702.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01483     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 7449787..7460467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG318_RS34230 (OG318_34205) - 7450220..7451020 (-) 801 WP_329368381.1 transcriptional regulator -
  OG318_RS34235 (OG318_34210) - 7451007..7451564 (+) 558 WP_329368383.1 tyrosine-type recombinase/integrase -
  OG318_RS34250 (OG318_34225) tig 7452181..7453587 (+) 1407 WP_329368385.1 trigger factor -
  OG318_RS34255 (OG318_34230) clpP 7454044..7454649 (+) 606 WP_329373932.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG318_RS34260 (OG318_34235) clpP 7454787..7455467 (+) 681 WP_266624702.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG318_RS34265 (OG318_34240) clpX 7455639..7456925 (+) 1287 WP_054231969.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG318_RS34270 (OG318_34245) - 7457015..7458013 (-) 999 WP_329368387.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24968.44 Da        Isoelectric Point: 4.6351

>NTDB_id=676265 OG318_RS34260 WP_266624702.1 7454787..7455467(+) (clpP) [Streptomyces sp. NBC_01483]
MNDFPGSGLYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEEMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNSSAIV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=676265 OG318_RS34260 WP_266624702.1 7454787..7455467(+) (clpP) [Streptomyces sp. NBC_01483]
GTGAACGACTTCCCCGGCAGCGGCCTCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCTATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCGTTTACGGCCCTCACGGCCATTTACGACACGATGCAGTT
CGTGAAGCCCGACATTCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCGG
GCAAGCGCATGGCGCTTCCGAACGCCCGCGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTCGAAATCGCTGCGAACGAGATCCTCCGGATGCGTGCGCAGCTGGAAGAGATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTCGCGTACGGCCTGATCGACCAGA
TCATCTCCACCCGCAAGATGAACAGTTCCGCGATCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

86.726

0.376