Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA56_RS06475 Genome accession   NZ_CP095102
Coordinates   1387464..1387799 (+) Length   111 a.a.
NCBI ID   WP_262550312.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6188     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1382464..1392799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA56_RS06445 (MUA56_06440) - 1383232..1383432 (+) 201 WP_002481044.1 YqgQ family protein -
  MUA56_RS06450 (MUA56_06445) - 1383432..1384418 (+) 987 WP_002481043.1 ROK family glucokinase -
  MUA56_RS06455 (MUA56_06450) - 1384418..1384747 (+) 330 WP_002481042.1 MTH1187 family thiamine-binding protein -
  MUA56_RS06460 (MUA56_06455) - 1384747..1385370 (+) 624 WP_057510470.1 MBL fold metallo-hydrolase -
  MUA56_RS06465 (MUA56_06460) comGA 1385427..1386401 (+) 975 WP_002481040.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA56_RS06470 (MUA56_06465) comGB 1386373..1387446 (+) 1074 WP_262550310.1 competence type IV pilus assembly protein ComGB -
  MUA56_RS06475 (MUA56_06470) comGC 1387464..1387799 (+) 336 WP_262550312.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA56_RS06480 (MUA56_06475) comGD 1387796..1388221 (+) 426 WP_002481037.1 competence type IV pilus minor pilin ComGD -
  MUA56_RS06485 (MUA56_06480) comGF 1388440..1388934 (+) 495 WP_262550314.1 competence type IV pilus minor pilin ComGF -
  MUA56_RS06490 (MUA56_06485) - 1389099..1389638 (+) 540 WP_002481034.1 shikimate kinase -
  MUA56_RS06495 (MUA56_06490) gcvT 1389817..1390911 (+) 1095 WP_023015155.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA56_RS06500 (MUA56_06495) gcvPA 1390933..1392282 (+) 1350 WP_057510473.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12285.45 Da        Isoelectric Point: 9.9608

>NTDB_id=675436 MUA56_RS06475 WP_262550312.1 1387464..1387799(+) (comGC) [Staphylococcus simulans strain IVB6188]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSVDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQKS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=675436 MUA56_RS06475 WP_262550312.1 1387464..1387799(+) (comGC) [Staphylococcus simulans strain IVB6188]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGCGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTGAATAAAAATAGAGCGCCTTCTTCAGTCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCTGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAAAAGTCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

71.579

85.586

0.613
  comGC Staphylococcus aureus MW2

71.579

85.586

0.613
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

94.595

0.396
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

86.486

0.369
  comGC/cglC Streptococcus mitis SK321

46.067

80.18

0.369
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

80.18

0.369
  comGC/cglC Streptococcus pneumoniae D39

44.944

80.18

0.36
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

80.18

0.36
  comGC/cglC Streptococcus pneumoniae R6

44.944

80.18

0.36