Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   MUB28_RS04790 Genome accession   NZ_CP094945
Coordinates   910898..911056 (-) Length   52 a.a.
NCBI ID   WP_014608276.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain VHProbi R08     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 905898..916056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUB28_RS04760 (MUB28_04760) cas1 906060..907064 (-) 1005 WP_014727507.1 CRISPR-associated endonuclease Cas1 -
  MUB28_RS04765 (MUB28_04765) - 907203..908150 (-) 948 WP_014608279.1 dihydroorotate dehydrogenase -
  MUB28_RS04770 (MUB28_04770) - 908169..908942 (-) 774 WP_011681108.1 dihydroorotate dehydrogenase electron transfer subunit -
  MUB28_RS04775 (MUB28_04775) - 909213..909761 (-) 549 WP_014608278.1 DJ-1 family glyoxalase III -
  MUB28_RS04785 (MUB28_04785) - 910028..910696 (-) 669 WP_014621543.1 TraX family protein -
  MUB28_RS04790 (MUB28_04790) prx 910898..911056 (-) 159 WP_014608276.1 hypothetical protein Regulator
  MUB28_RS04795 (MUB28_04795) - 911553..911744 (-) 192 WP_011681104.1 hypothetical protein -
  MUB28_RS04800 (MUB28_04800) - 911748..912233 (-) 486 WP_014607832.1 NUDIX domain-containing protein -
  MUB28_RS04805 (MUB28_04805) - 912539..913495 (-) 957 WP_014727508.1 hypothetical protein -
  MUB28_RS04810 (MUB28_04810) - 913818..915476 (+) 1659 WP_014608275.1 NFACT RNA binding domain-containing protein -

Sequence

Protein


Download         Length: 52 a.a.        Molecular weight: 5835.59 Da        Isoelectric Point: 4.6646

>NTDB_id=674409 MUB28_RS04790 WP_014608276.1 910898..911056(-) (prx) [Streptococcus thermophilus strain VHProbi R08]
MDNGFIKGDTVQIVRKNGKIHDYVLDGERVEPHEILSLEKVSDIIKELGGDN

Nucleotide


Download         Length: 159 bp        

>NTDB_id=674409 MUB28_RS04790 WP_014608276.1 910898..911056(-) (prx) [Streptococcus thermophilus strain VHProbi R08]
ATGGACAACGGTTTTATTAAAGGTGATACTGTCCAGATTGTCCGAAAGAATGGTAAGATCCATGACTACGTTTTAGACGG
TGAACGAGTTGAGCCACACGAAATATTGAGCTTAGAAAAGGTATCGGATATAATAAAAGAACTAGGCGGAGACAACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

54.167

92.308

0.5
  prx Streptococcus pyogenes MGAS8232

53.061

94.231

0.5
  prx Streptococcus pyogenes MGAS315

51.02

94.231

0.481
  prx Streptococcus pyogenes MGAS315

50

92.308

0.462
  prx Streptococcus pyogenes MGAS315

71.875

61.538

0.442
  prx Streptococcus pyogenes MGAS315

61.765

65.385

0.404
  prx Streptococcus pyogenes MGAS315

70

57.692

0.404