Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OHA04_RS26610 Genome accession   NZ_CP109330
Coordinates   5841548..5842228 (+) Length   226 a.a.
NCBI ID   WP_093898221.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01590     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5836548..5847228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA04_RS26580 (OHA04_26550) - 5836711..5837865 (-) 1155 WP_405712603.1 acyltransferase family protein -
  OHA04_RS26585 (OHA04_26555) - 5838367..5838561 (+) 195 WP_266733056.1 hypothetical protein -
  OHA04_RS26600 (OHA04_26570) tig 5839190..5840599 (+) 1410 WP_406501503.1 trigger factor -
  OHA04_RS26605 (OHA04_26575) - 5840865..5841470 (+) 606 WP_329202714.1 ATP-dependent Clp protease proteolytic subunit -
  OHA04_RS26610 (OHA04_26580) clpP 5841548..5842228 (+) 681 WP_093898221.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OHA04_RS26615 (OHA04_26585) clpX 5842386..5843684 (+) 1299 WP_072483632.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OHA04_RS26620 (OHA04_26590) - 5844689..5844940 (-) 252 WP_405712599.1 hypothetical protein -
  OHA04_RS26625 (OHA04_26595) - 5845166..5846212 (-) 1047 WP_405751959.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24794.20 Da        Isoelectric Point: 4.6747

>NTDB_id=674358 OHA04_RS26610 WP_093898221.1 5841548..5842228(+) (clpP) [Streptomyces sp. NBC_01590]
MVNTHMNNFPGASASGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPIDKIRDDIERDKILTAEDALAYGLVDQIVSTRKQAATAV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=674358 OHA04_RS26610 WP_093898221.1 5841548..5842228(+) (clpP) [Streptomyces sp. NBC_01590]
ATGGTGAACACCCACATGAACAACTTCCCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CATCGTGCCGCGCTTCGTGGAGCGCACCTCTCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTCGCCGCGGGTACGC
CCGGCAAGCGGATGGCGCTGCCCAACGCCCGCGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCC
GATCGACAAGATCCGCGACGACATCGAGCGCGACAAGATCCTGACCGCCGAGGATGCCCTCGCCTACGGTCTTGTCGACC
AGATCGTGTCGACCCGCAAGCAGGCGGCCACGGCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

84.071

0.42
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

83.628

0.403
  clpP Streptococcus pyogenes MGAS315

44.845

85.841

0.385
  clpP Streptococcus pyogenes JRS4

44.845

85.841

0.385
  clpP Streptococcus thermophilus LMD-9

44.33

85.841

0.381
  clpP Streptococcus thermophilus LMG 18311

44.33

85.841

0.381
  clpP Streptococcus mutans UA159

45.263

84.071

0.381
  clpP Streptococcus pneumoniae Rx1

43.75

84.956

0.372
  clpP Streptococcus pneumoniae D39

43.75

84.956

0.372
  clpP Streptococcus pneumoniae R6

43.75

84.956

0.372
  clpP Streptococcus pneumoniae TIGR4

43.75

84.956

0.372
  clpP Lactococcus lactis subsp. cremoris KW2

43.979

84.513

0.372
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.455

84.513

0.367