Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MTP21_RS04525 Genome accession   NZ_CP094880
Coordinates   982296..982580 (+) Length   94 a.a.
NCBI ID   WP_031779272.1    Uniprot ID   A0AAN0Y541
Organism   Vibrio natriegens strain WPAGA4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 977296..987580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTP21_RS04515 - 979773..980045 (+) 273 WP_014231223.1 HU family DNA-binding protein -
  MTP21_RS04520 ppiD 980249..982108 (+) 1860 WP_243976352.1 peptidylprolyl isomerase -
  MTP21_RS04525 comEA 982296..982580 (+) 285 WP_031779272.1 ComEA family DNA-binding protein Machinery gene
  MTP21_RS04530 rrtA 982663..983214 (-) 552 WP_243976366.1 rhombosortase -
  MTP21_RS04535 - 983218..983841 (+) 624 WP_243976369.1 DTW domain-containing protein -
  MTP21_RS04540 - 983838..985160 (-) 1323 WP_243976371.1 anti-phage deoxyguanosine triphosphatase -
  MTP21_RS04545 yfbR 985184..985768 (-) 585 WP_014231229.1 5'-deoxynucleotidase -
  MTP21_RS04550 - 985859..987073 (-) 1215 WP_014231230.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10182.78 Da        Isoelectric Point: 5.0914

>NTDB_id=673878 MTP21_RS04525 WP_031779272.1 982296..982580(+) (comEA) [Vibrio natriegens strain WPAGA4]
MKWVLTLLLCVFAPFGLAADTTADKYEGIEITVNINSATAEEIATMLKGIGEKKAQDIVDYRTEHGPFKTVSDLGNVKGI
GDATLKKNEGRIIL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=673878 MTP21_RS04525 WP_031779272.1 982296..982580(+) (comEA) [Vibrio natriegens strain WPAGA4]
ATGAAATGGGTTTTAACTTTATTGTTATGCGTATTTGCACCGTTTGGGTTGGCAGCAGATACAACAGCGGATAAATATGA
AGGAATTGAAATTACCGTAAACATCAATTCAGCGACAGCTGAAGAGATTGCAACAATGCTGAAAGGGATTGGTGAAAAGA
AAGCGCAAGATATTGTCGATTATCGTACAGAGCATGGCCCATTTAAAACAGTGAGTGACCTGGGGAATGTTAAGGGAATC
GGAGATGCTACTTTGAAGAAAAACGAAGGTCGCATCATCCTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

82.979

100

0.83
  comEA Vibrio campbellii strain DS40M4

71.579

100

0.723
  comEA Vibrio cholerae strain A1552

57.447

100

0.574
  comEA Vibrio cholerae C6706

57.447

100

0.574
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comEA Acinetobacter baylyi ADP1

50.746

71.277

0.362