Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MT343_RS01890 Genome accession   NZ_CP094879
Coordinates   436176..438230 (+) Length   684 a.a.
NCBI ID   WP_243989452.1    Uniprot ID   -
Organism   Thalassolituus sp. C2-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 431176..443230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MT343_RS01870 pilM 433285..434382 (+) 1098 WP_366516530.1 pilus assembly protein PilM Machinery gene
  MT343_RS01875 - 434382..434930 (+) 549 WP_145470732.1 PilN domain-containing protein -
  MT343_RS01880 - 434935..435579 (+) 645 WP_145470734.1 type 4a pilus biogenesis protein PilO -
  MT343_RS01885 - 435581..436120 (+) 540 WP_145470736.1 pilus assembly protein PilP -
  MT343_RS01890 pilQ 436176..438230 (+) 2055 WP_243989452.1 type IV pilus secretin PilQ Machinery gene
  MT343_RS01895 aroK 438234..438749 (+) 516 WP_145470740.1 shikimate kinase AroK -
  MT343_RS01900 aroB 438755..439846 (+) 1092 WP_145470742.1 3-dehydroquinate synthase -
  MT343_RS01905 - 439869..441401 (+) 1533 WP_145470744.1 AAA family ATPase -

Sequence

Protein


Download         Length: 684 a.a.        Molecular weight: 74379.33 Da        Isoelectric Point: 4.6018

>NTDB_id=673845 MT343_RS01890 WP_243989452.1 436176..438230(+) (pilQ) [Thalassolituus sp. C2-1]
MLAFMASLASATTLNDLRFSSLPGDVTEIRMEFDGTPPQVSGYTIEQPARIALDLPGVVSTLKTKRHQIGSGNARSATLV
STKDRSRLVINLTRLVGYTTKVEGNTLLLRIGQTEGDKVFAADVKSSSPSGMLNNDLKVVNVDFRRGELGEGQVQIMLND
PRASANIRREGNKIIADLKGVRLPEALSRRLDVTDFATPVRYVDTKREDSSTRIVIEPVGDDFEYLAYQTDKLLSINVSV
VPEEQREERKKQFPFTGEKLSLNFQNIEVRAVLQLIADFTGLNLVASDTVQGSITLRLQNVPWDQALDLVLKTKGLGKRQ
MGSVLLIAPSEEIAAREKIELEAVKQVEELAPLVTEYMQLKYAKASDLAKLLTSEQGLLSERGSAVVDERTNTLLMKDTA
GNLEKVREALNMLDVPVRQVLIEARIVVATTSVGEEMGVKWGGAGYQKNSGNDFTRSTVVGGSQATLAEGNQILLDRFNG
DEPEAINLTSANIVDFGVTNAAATTFAIGYQTADYLLDLELAAIETDGRAEIVSQPRVITADGQTASIESGTEIPYQQAS
SSGATNVSFKSAVLRLEVTPQITPDDRIIMDLVINQDSVGELTPAGPSINTNAVETQVLVDNGETVVLGGIFRSEEVTAI
SKTPFFGDLPLIGALFRYNSHSEDKSELLVFITPRLVKDSLSNR

Nucleotide


Download         Length: 2055 bp        

>NTDB_id=673845 MT343_RS01890 WP_243989452.1 436176..438230(+) (pilQ) [Thalassolituus sp. C2-1]
ATGCTGGCTTTTATGGCCTCGCTTGCTTCTGCAACGACACTTAACGATCTTCGTTTTTCATCTTTACCTGGTGATGTGAC
CGAGATCCGGATGGAATTTGATGGAACACCGCCACAAGTCAGTGGCTATACCATTGAGCAGCCAGCCCGTATTGCGTTGG
ATTTGCCAGGTGTGGTCAGTACGCTGAAAACAAAGCGCCATCAGATTGGCTCCGGTAATGCACGCAGCGCCACCTTGGTG
TCGACCAAAGATCGTTCTCGTCTGGTTATTAATCTGACCCGCCTGGTGGGTTATACCACTAAGGTTGAGGGGAATACTCT
GCTGTTACGGATTGGGCAGACGGAAGGTGACAAAGTATTTGCTGCTGATGTTAAATCCAGCTCTCCGTCAGGCATGCTCA
ATAATGACCTGAAAGTAGTTAATGTTGATTTTCGTCGTGGTGAGTTGGGAGAAGGTCAGGTTCAGATTATGCTGAATGAC
CCTCGCGCATCTGCCAATATTCGCCGTGAGGGCAATAAAATTATTGCCGATCTTAAAGGCGTACGCCTGCCGGAAGCTTT
GAGTCGTCGCCTGGATGTCACTGATTTTGCCACGCCGGTTCGTTATGTTGATACCAAACGCGAAGATAGCTCTACCCGTA
TTGTGATTGAGCCTGTGGGCGATGATTTTGAATATCTGGCTTATCAGACAGATAAACTGCTCTCTATTAACGTATCTGTA
GTGCCGGAAGAGCAGAGAGAAGAGCGTAAGAAGCAATTCCCGTTTACCGGCGAAAAGCTGTCGCTTAATTTCCAGAATAT
TGAAGTTCGTGCCGTGTTGCAGCTGATTGCCGACTTTACCGGTTTGAATCTGGTGGCATCAGACACTGTTCAGGGCAGTA
TTACATTACGTCTGCAAAATGTGCCGTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAAGGGCTGGGTAAGCGTCAG
ATGGGGTCTGTATTGTTGATCGCGCCATCCGAGGAAATTGCTGCGCGTGAAAAAATCGAACTGGAAGCGGTGAAGCAGGT
TGAAGAGCTGGCTCCTCTGGTTACTGAGTACATGCAGTTAAAATATGCTAAAGCCAGCGATCTGGCGAAGCTGCTGACTT
CCGAGCAGGGTTTGTTGTCTGAGCGTGGCTCTGCGGTCGTTGATGAACGCACGAATACTCTGCTCATGAAAGATACCGCT
GGTAATCTGGAAAAAGTCCGTGAAGCTCTGAATATGCTGGATGTGCCAGTGCGTCAGGTGCTTATTGAAGCCCGTATCGT
TGTTGCGACGACCAGTGTCGGCGAAGAAATGGGTGTTAAGTGGGGTGGTGCCGGCTACCAAAAAAACAGTGGCAATGATT
TTACTCGTTCAACCGTGGTTGGGGGTAGTCAAGCGACACTGGCGGAAGGCAATCAGATTCTGCTTGACCGCTTTAATGGT
GACGAGCCGGAAGCCATCAATCTGACTTCAGCCAATATCGTTGATTTTGGTGTGACTAATGCCGCGGCCACAACCTTCGC
TATTGGCTATCAGACTGCAGATTATTTATTGGATCTGGAGTTAGCTGCAATTGAAACCGATGGTCGTGCGGAAATCGTAT
CACAGCCACGGGTGATTACAGCCGATGGTCAGACGGCTTCTATTGAGTCCGGTACTGAAATTCCATACCAACAGGCCAGT
TCCAGTGGTGCAACCAATGTGTCGTTCAAGTCTGCGGTTCTGCGTCTGGAAGTAACGCCGCAGATTACACCGGATGACCG
CATCATTATGGATCTGGTGATCAATCAGGACTCCGTTGGTGAATTGACCCCTGCAGGACCAAGCATCAACACCAATGCGG
TGGAAACTCAGGTGCTGGTCGATAATGGCGAAACTGTCGTATTGGGCGGTATTTTCCGCTCGGAAGAAGTGACGGCAATC
AGTAAAACGCCGTTCTTTGGTGACCTGCCATTAATTGGCGCGCTGTTCCGTTATAACAGCCACTCCGAAGACAAGAGCGA
ACTGCTGGTGTTTATCACTCCACGTCTGGTTAAGGATTCGCTCAGCAATCGTTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(26-109)

Bacterial type II and III secretion system protein (Secretin)

(523-678)

Secretin and TonB N terminus short domain (STN)

(283-329)

Bacterial type II/III secretion system short domain (Secretin_N)

(357-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

47.801

100

0.493
  pilQ Acinetobacter baumannii strain A118

41.413

100

0.437
  pilQ Acinetobacter baumannii D1279779

41.413

100

0.437
  comQ Acinetobacter baylyi ADP1

41.408

100

0.43
  pilQ Legionella pneumophila strain ERS1305867

39.941

98.83

0.395
  pilQ Legionella pneumophila strain Lp02

39.941

98.83

0.395