Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA60_RS07330 Genome accession   NZ_CP094824
Coordinates   1411383..1411700 (+) Length   105 a.a.
NCBI ID   WP_037588275.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain IVB6216     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406383..1416700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA60_RS07305 (MUA60_07295) - 1406701..1407333 (+) 633 WP_262650465.1 MBL fold metallo-hydrolase -
  MUA60_RS07310 (MUA60_07300) - 1407549..1408901 (+) 1353 WP_262650467.1 IS1182 family transposase -
  MUA60_RS07315 (MUA60_07305) - 1409033..1409281 (-) 249 WP_025904960.1 DUF2626 family protein -
  MUA60_RS07320 (MUA60_07310) comGA 1409435..1410337 (+) 903 WP_262650468.1 competence type IV pilus ATPase ComGA -
  MUA60_RS07325 (MUA60_07315) comGB 1410327..1411367 (+) 1041 WP_262650469.1 competence type IV pilus assembly protein ComGB -
  MUA60_RS07330 (MUA60_07320) comGC 1411383..1411700 (+) 318 WP_037588275.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA60_RS07335 (MUA60_07325) - 1411729..1412127 (+) 399 WP_262650599.1 prepilin-type cleavage/methylation domain-containing protein -
  MUA60_RS07340 (MUA60_07330) comGE 1412111..1412392 (+) 282 WP_262650471.1 competence type IV pilus minor pilin ComGE -
  MUA60_RS07345 (MUA60_07335) - 1412367..1412801 (+) 435 WP_262650473.1 competence type IV pilus minor pilin ComGF -
  MUA60_RS07350 (MUA60_07340) - 1413036..1413524 (+) 489 WP_262650475.1 shikimate kinase -
  MUA60_RS07355 (MUA60_07345) gcvT 1413717..1414805 (+) 1089 WP_262650600.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA60_RS07360 (MUA60_07350) gcvPA 1414817..1416160 (+) 1344 WP_262650476.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11591.65 Da        Isoelectric Point: 8.5043

>NTDB_id=673445 MUA60_RS07330 WP_037588275.1 1411383..1411700(+) (comGC) [Mammaliicoccus sciuri strain IVB6216]
MKRFKFLSKKEGFTLVEMLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLVSDG
YINQKQLTCKSGETITLENGEVVAH

Nucleotide


Download         Length: 318 bp        

>NTDB_id=673445 MUA60_RS07330 WP_037588275.1 1411383..1411700(+) (comGC) [Mammaliicoccus sciuri strain IVB6216]
ATGAAAAGATTTAAATTTTTAAGTAAAAAAGAAGGATTTACATTGGTTGAAATGTTAATTGTTCTTTTAATTATAAGTAT
ATTATTGGTGATCATCATACCAAACATAAGTAAGCAATCAGAGACGGTAAAAAGTACTGGATGCCAAGCTCAAGTGAAGA
TGGTTGCTGGGCAAGTAGAAGCTTATACATTGAAGCACGATGCTAAACCAAATTCTATAAATGATTTAGTAAGTGATGGT
TATATTAATCAAAAGCAACTGACATGTAAATCAGGTGAAACAATTACACTTGAAAATGGTGAAGTTGTTGCACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

64.706

97.143

0.629
  comGC Staphylococcus aureus MW2

64.706

97.143

0.629
  comGC Bacillus subtilis subsp. subtilis str. 168

47.312

88.571

0.419
  comYC Streptococcus mutans UA159

49.425

82.857

0.41
  comYC Streptococcus mutans UA140

49.425

82.857

0.41
  comYC Streptococcus gordonii str. Challis substr. CH1

48.837

81.905

0.4
  comGC/cglC Streptococcus mitis NCTC 12261

46.988

79.048

0.371
  comGC/cglC Streptococcus mitis SK321

46.988

79.048

0.371
  comGC Lactococcus lactis subsp. cremoris KW2

46.914

77.143

0.362
  comYC Streptococcus suis isolate S10

48.718

74.286

0.362