Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   H7R47_RS06105 Genome accession   NZ_AP022287
Coordinates   1276185..1277177 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain WP9-S17-ESBL-11     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1271185..1282177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R47_RS06080 (WP9S17E11_11880) ygbN 1271840..1273204 (+) 1365 WP_000104457.1 GntP family transporter -
  H7R47_RS06085 (WP9S17E11_11890) - 1273243..1273479 (-) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  H7R47_RS06090 (WP9S17E11_11900) - 1273490..1274917 (-) 1428 WP_001551547.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  H7R47_RS06095 (WP9S17E11_11910) - 1274917..1275510 (-) 594 WP_001237173.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  H7R47_RS06100 (WP9S17E11_11920) - 1275657..1276064 (+) 408 WP_001208066.1 MarR family transcriptional regulator -
  H7R47_RS06105 (WP9S17E11_11930) rpoS 1276185..1277177 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  H7R47_RS06110 (WP9S17E11_11940) nlpD 1277240..1278334 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  H7R47_RS06115 (WP9S17E11_11950) pcm 1278519..1279145 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  H7R47_RS06120 (WP9S17E11_11960) surE 1279139..1279900 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  H7R47_RS06125 (WP9S17E11_11970) truD 1279881..1280930 (-) 1050 WP_000568924.1 tRNA pseudouridine(13) synthase TruD -
  H7R47_RS06130 (WP9S17E11_11980) ispF 1280927..1281406 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  H7R47_RS06135 (WP9S17E11_11990) ispD 1281406..1282116 (-) 711 WP_000246131.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=67258 H7R47_RS06105 WP_000081550.1 1276185..1277177(-) (rpoS) [Escherichia coli strain WP9-S17-ESBL-11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=67258 H7R47_RS06105 WP_000081550.1 1276185..1277177(-) (rpoS) [Escherichia coli strain WP9-S17-ESBL-11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment