Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   SITYG_RS02835 Genome accession   NZ_AP014880
Coordinates   555580..556194 (+) Length   204 a.a.
NCBI ID   WP_225791046.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   degradation of ComX; degradation of ComW (predicted from homology)   
Competence regulation

Genomic Context

Location: 550580..561194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS02825 (SITYG_05400) mgtA 552110..554764 (+) 2655 WP_096362612.1 magnesium-translocating P-type ATPase -
  SITYG_RS02830 (SITYG_05410) upp 554862..555491 (+) 630 WP_003025639.1 uracil phosphoribosyltransferase -
  SITYG_RS02835 (SITYG_05420) clpP 555580..556194 (+) 615 WP_225791046.1 ATP-dependent Clp protease proteolytic subunit Regulator
  SITYG_RS02840 (SITYG_05430) - 556285..556554 (+) 270 WP_096362613.1 DUF2129 domain-containing protein -
  SITYG_RS02845 (SITYG_05440) - 556637..557800 (+) 1164 WP_003073517.1 ABC transporter substrate-binding protein -
  SITYG_RS02850 (SITYG_05450) - 558183..559052 (+) 870 WP_096362614.1 branched-chain amino acid ABC transporter permease -
  SITYG_RS02855 (SITYG_05460) - 559056..560006 (+) 951 WP_082311727.1 branched-chain amino acid ABC transporter permease -
  SITYG_RS02860 (SITYG_05470) - 560006..560770 (+) 765 WP_082311726.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22424.53 Da        Isoelectric Point: 4.6199

>NTDB_id=67248 SITYG_RS02835 WP_225791046.1 555580..556194(+) (clpP) [Streptococcus intermedius strain TYG1620]
MSDEKENTMIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGAVEDNMANSIIAQLLFLDAQDSTKDIYLYINTPGGSVSAG
LAIVDTMNFIKSDVQTIVMGMAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNNLEK
ILADNSGKTVKQVHKDAERDYWMSAQETLDYGFIDEIMANNNLN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=67248 SITYG_RS02835 WP_225791046.1 555580..556194(+) (clpP) [Streptococcus intermedius strain TYG1620]
ATATCAGATGAAAAGGAGAATACAATGATTCCTGTAGTTATTGAACAAACAAGCCGTGGGGAACGCTCGTACGATATTTA
CTCACGTCTTTTAAAAGATCGCATTATTATGTTAACTGGAGCAGTTGAAGACAACATGGCCAATTCTATTATTGCCCAAC
TGCTTTTCCTAGATGCTCAAGATAGTACAAAGGATATTTATCTTTATATCAATACGCCAGGAGGTTCTGTATCAGCGGGT
CTAGCGATTGTCGATACAATGAACTTCATCAAATCAGATGTTCAAACAATTGTCATGGGAATGGCTGCGTCCATGGGAAC
AATCATCGCTTCAAGTGGTGCTAAAGGCAAACGCTTTATGTTGCCAAATGCAGAGTACATGATTCATCAACCAATGGGTG
GAACTGGTGGCGGTACGCAACAAACCGATATGGCGATTGCTGCTGAACATTTGCTGAAAACTCGAAACAATTTGGAAAAA
ATTCTTGCAGATAACTCTGGTAAGACCGTTAAGCAAGTTCATAAAGATGCTGAACGTGACTACTGGATGAGTGCTCAAGA
AACACTAGATTATGGTTTCATTGATGAAATCATGGCAAATAACAACTTGAACTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(19-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pneumoniae Rx1

91.837

96.078

0.882
  clpP Streptococcus pneumoniae D39

91.837

96.078

0.882
  clpP Streptococcus pneumoniae R6

91.837

96.078

0.882
  clpP Streptococcus pneumoniae TIGR4

91.837

96.078

0.882
  clpP Streptococcus thermophilus LMD-9

91.795

95.588

0.877
  clpP Streptococcus thermophilus LMG 18311

91.795

95.588

0.877
  clpP Streptococcus mutans UA159

88.177

99.51

0.877
  clpP Streptococcus pyogenes MGAS315

91.282

95.588

0.873
  clpP Streptococcus pyogenes JRS4

91.282

95.588

0.873
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

85.128

95.588

0.814
  clpP Lactococcus lactis subsp. cremoris KW2

84.615

95.588

0.809
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.549

94.608

0.554
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

94.118

0.544

Multiple sequence alignment