Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MUA28_RS06840 Genome accession   NZ_CP094707
Coordinates   1435339..1435668 (+) Length   109 a.a.
NCBI ID   WP_002481038.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6192     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430339..1440668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA28_RS06810 (MUA28_06785) - 1431107..1431307 (+) 201 WP_002481044.1 YqgQ family protein -
  MUA28_RS06815 (MUA28_06790) - 1431307..1432293 (+) 987 WP_262570426.1 ROK family glucokinase -
  MUA28_RS06820 (MUA28_06795) - 1432293..1432622 (+) 330 WP_002481042.1 MTH1187 family thiamine-binding protein -
  MUA28_RS06825 (MUA28_06800) - 1432622..1433245 (+) 624 WP_057510470.1 MBL fold metallo-hydrolase -
  MUA28_RS06830 (MUA28_06805) comGA 1433302..1434276 (+) 975 WP_262570428.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA28_RS06835 (MUA28_06810) comGB 1434248..1435321 (+) 1074 WP_057510472.1 competence type IV pilus assembly protein ComGB -
  MUA28_RS06840 (MUA28_06815) comGC 1435339..1435668 (+) 330 WP_002481038.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA28_RS06845 (MUA28_06820) comGD 1435671..1436096 (+) 426 WP_262570431.1 competence type IV pilus minor pilin ComGD -
  MUA28_RS06850 (MUA28_06825) comGF 1436315..1436809 (+) 495 WP_002481036.1 competence type IV pilus minor pilin ComGF -
  MUA28_RS06855 (MUA28_06830) - 1436974..1437513 (+) 540 WP_262570433.1 shikimate kinase -
  MUA28_RS06860 (MUA28_06835) gcvT 1437692..1438786 (+) 1095 WP_262570435.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA28_RS06865 (MUA28_06840) gcvPA 1438808..1440157 (+) 1350 WP_057510473.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 12084.23 Da        Isoelectric Point: 9.6828

>NTDB_id=670882 MUA28_RS06840 WP_002481038.1 1435339..1435668(+) (comGC) [Staphylococcus simulans strain IVB6192]
MKNLVKNLKHKYLRAFTLLEMLLVLLVISVLLILIIPNIAKQSKHVQDTGCEAQQKMVNSQIEAFTLNKNRAPSSIDELV
SEGFLKEGQKTCKSGKTITISDGEATVSQ

Nucleotide


Download         Length: 330 bp        

>NTDB_id=670882 MUA28_RS06840 WP_002481038.1 1435339..1435668(+) (comGC) [Staphylococcus simulans strain IVB6192]
ATGAAAAACCTTGTCAAAAACTTAAAACATAAATATTTACGAGCATTTACTTTACTAGAAATGCTTTTAGTTCTTTTAGT
TATCAGCGTTTTATTGATACTCATTATTCCAAATATCGCTAAACAATCTAAGCATGTTCAAGATACTGGGTGTGAAGCAC
AACAAAAAATGGTGAATAGCCAAATAGAAGCTTTTACTCTGAATAAAAATAGAGCGCCTTCTTCAATCGATGAATTAGTT
AGTGAAGGATTTTTAAAAGAAGGTCAAAAAACATGTAAATCTGGAAAAACGATTACAATCAGCGACGGCGAAGCTACCGT
TAGTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

72.632

87.156

0.633
  comGC Staphylococcus aureus MW2

72.632

87.156

0.633
  comGC/cglC Streptococcus pneumoniae TIGR4

41.905

96.33

0.404
  comGC Bacillus subtilis subsp. subtilis str. 168

42.708

88.073

0.376
  comGC/cglC Streptococcus mitis SK321

46.067

81.651

0.376
  comGC/cglC Streptococcus mitis NCTC 12261

46.067

81.651

0.376
  comGC/cglC Streptococcus pneumoniae D39

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae Rx1

44.944

81.651

0.367
  comGC/cglC Streptococcus pneumoniae R6

44.944

81.651

0.367