Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA81_RS08095 Genome accession   NZ_CP094697
Coordinates   1671479..1671925 (-) Length   148 a.a.
NCBI ID   WP_262900411.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6244     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1666479..1676925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA81_RS08055 (MUA81_08035) - 1666735..1667172 (-) 438 WP_262900404.1 DUF3310 domain-containing protein -
  MUA81_RS08060 (MUA81_08040) - 1667173..1667700 (-) 528 WP_262900405.1 hypothetical protein -
  MUA81_RS08065 (MUA81_08045) - 1667713..1667904 (-) 192 WP_262900406.1 hypothetical protein -
  MUA81_RS08070 (MUA81_08050) - 1667901..1668311 (-) 411 WP_262900407.1 RusA family crossover junction endodeoxyribonuclease -
  MUA81_RS08075 (MUA81_08055) - 1668477..1669250 (-) 774 WP_262900408.1 ATP-binding protein -
  MUA81_RS08080 (MUA81_08060) - 1669263..1669982 (-) 720 WP_262900409.1 helix-turn-helix domain-containing protein -
  MUA81_RS08085 (MUA81_08065) - 1670026..1670682 (+) 657 WP_262546154.1 hypothetical protein -
  MUA81_RS08090 (MUA81_08070) - 1670792..1671466 (-) 675 WP_262900410.1 putative HNHc nuclease -
  MUA81_RS08095 (MUA81_08075) ssbA 1671479..1671925 (-) 447 WP_262900411.1 single-stranded DNA-binding protein Machinery gene
  MUA81_RS08100 (MUA81_08080) - 1671925..1672569 (-) 645 WP_262900412.1 ERF family protein -
  MUA81_RS08105 (MUA81_08085) - 1672569..1673054 (-) 486 WP_262900413.1 siphovirus Gp157 family protein -
  MUA81_RS08110 (MUA81_08090) - 1673057..1673323 (-) 267 WP_262900414.1 DUF1108 family protein -
  MUA81_RS08115 (MUA81_08095) - 1673426..1673641 (-) 216 WP_023015645.1 hypothetical protein -
  MUA81_RS08120 (MUA81_08100) - 1673654..1673956 (-) 303 WP_107534244.1 DUF771 domain-containing protein -
  MUA81_RS08125 (MUA81_08105) - 1674006..1674503 (+) 498 WP_262900415.1 hypothetical protein -
  MUA81_RS08130 (MUA81_08110) - 1674621..1674854 (+) 234 WP_107552845.1 hypothetical protein -
  MUA81_RS08135 (MUA81_08115) - 1674838..1675002 (-) 165 WP_262900416.1 hypothetical protein -
  MUA81_RS08140 (MUA81_08120) - 1675087..1675254 (+) 168 WP_023015649.1 hypothetical protein -
  MUA81_RS08145 (MUA81_08125) - 1675282..1676055 (-) 774 WP_262900417.1 Rha family transcriptional regulator -
  MUA81_RS08150 (MUA81_08130) - 1676069..1676515 (-) 447 WP_262900418.1 hypothetical protein -
  MUA81_RS08155 (MUA81_08135) - 1676549..1676773 (-) 225 WP_262900419.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16736.42 Da        Isoelectric Point: 4.9467

>NTDB_id=670733 MUA81_RS08095 WP_262900411.1 1671479..1671925(-) (ssbA) [Staphylococcus simulans strain IVB6244]
MINRVVLVGRLTKDPEFRTTPSGVDVATFTLAVNHNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGIDGRLQSR
SYENKEGQRVFVTEVVCDSVQFLEPKNAQTSNNNQSNNEVQQREKALQSENPFNNSNNFDMDTDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=670733 MUA81_RS08095 WP_262900411.1 1671479..1671925(-) (ssbA) [Staphylococcus simulans strain IVB6244]
ATGATTAACAGAGTTGTATTAGTAGGTCGTTTAACAAAAGACCCGGAATTCAGAACAACCCCGAGCGGTGTAGATGTAGC
AACATTCACACTAGCGGTCAACCATAATTTTAAGAGTAAAAACGGAGAGCAACAGGCGGACTTTATCAACTGTGTTGTAT
TCCGTAAACAAGCAGAAAACGTCAATAATTATTTGAATAAAGGCAGTTTAGCAGGTATCGATGGTCGCTTACAATCACGA
AGCTATGAGAATAAGGAAGGGCAAAGAGTGTTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TGCACAAACCTCAAACAATAACCAATCAAATAACGAAGTGCAGCAAAGAGAGAAGGCACTTCAAAGCGAAAATCCATTCA
ATAATAGCAACAACTTTGATATGGATACGGATGATTTACCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.649
  ssb Latilactobacillus sakei subsp. sakei 23K

48.824

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

71.622

0.412
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.189

100

0.392
  ssb Glaesserella parasuis strain SC1401

31.148

100

0.385
  ssb Vibrio cholerae strain A1552

31.792

100

0.372
  ssbA Streptococcus mutans UA159

45.833

81.081

0.372