Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   MUA73_RS08585 Genome accession   NZ_CP094696
Coordinates   1783673..1784563 (-) Length   296 a.a.
NCBI ID   WP_262556937.1    Uniprot ID   -
Organism   Staphylococcus simulans strain IVB6251     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1778673..1789563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA73_RS08570 (MUA73_08560) xerC 1779061..1779951 (-) 891 WP_002480690.1 tyrosine recombinase XerC -
  MUA73_RS08575 (MUA73_08565) trmFO 1780073..1781380 (-) 1308 WP_002480689.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  MUA73_RS08580 (MUA73_08570) topA 1781464..1783530 (-) 2067 WP_262556936.1 type I DNA topoisomerase -
  MUA73_RS08585 (MUA73_08575) dprA 1783673..1784563 (-) 891 WP_262556937.1 DNA-processing protein DprA Machinery gene
  MUA73_RS08590 (MUA73_08580) sucD 1784784..1785698 (-) 915 WP_023015699.1 succinate--CoA ligase subunit alpha -
  MUA73_RS08595 (MUA73_08585) sucC 1785719..1786885 (-) 1167 WP_262556938.1 ADP-forming succinate--CoA ligase subunit beta -
  MUA73_RS08600 (MUA73_08590) - 1787114..1787884 (-) 771 WP_107587152.1 ribonuclease HII -
  MUA73_RS08605 (MUA73_08595) ylqF 1787884..1788753 (-) 870 WP_023015701.1 ribosome biogenesis GTPase YlqF -
  MUA73_RS08610 (MUA73_08600) - 1788899..1789387 (-) 489 WP_002480682.1 GyrI-like domain-containing protein -

Sequence


Protein


Download         Length: 296 a.a.        Molecular weight: 34008.16 Da        Isoelectric Point: 9.0091

>NTDB_id=670705 MUA73_RS08585 WP_262556937.1 1783673..1784563(-) (dprA) [Staphylococcus simulans strain IVB6251]
MNLKELNLELLKLRYAGYSTKQIYALLFRYPDYFELNLPERMTKLRQFSQNTASKTMLLHYQTYCQIEPNDIYQSLVAQN
IHLISIFHPDYPHLLKHIYAPPLLLFCKGNRTCLKAPHYLSVVGSREATKYTQNALEYLFKNEVLHDLVIVSGLAKGGDA
FAHEAALHYNMATIGVLAFGHYHHYPKETRALRKRIEQTGLTLSEYIPTDRPARYKFPERNRIISGLSQGVLITESRERS
GAQITVDLALEQDRNVYVLPGSLFQKLTIGNLKRAQEGAKIVLSAQDIMEDYETLN

Nucleotide


Download         Length: 891 bp        

>NTDB_id=670705 MUA73_RS08585 WP_262556937.1 1783673..1784563(-) (dprA) [Staphylococcus simulans strain IVB6251]
TTGAACCTCAAAGAATTAAATTTAGAACTCCTCAAATTACGCTACGCAGGTTACTCCACAAAGCAAATATACGCACTTTT
ATTCAGGTATCCAGACTATTTTGAACTAAATTTACCAGAAAGAATGACAAAACTTCGACAATTTTCACAAAATACTGCCT
CTAAAACTATGCTTCTGCATTATCAAACATATTGTCAGATAGAGCCTAATGATATTTATCAATCGTTAGTTGCTCAAAAC
ATCCACTTAATTTCCATTTTTCATCCTGATTATCCTCACTTGCTTAAACACATTTATGCACCTCCATTATTATTATTTTG
TAAAGGCAATAGAACTTGCTTAAAAGCACCTCACTATTTAAGTGTCGTCGGTTCTAGAGAAGCGACAAAGTATACACAAA
ATGCATTAGAATATCTCTTTAAAAATGAAGTGTTGCATGATCTCGTTATCGTTTCAGGTTTAGCTAAAGGTGGAGATGCA
TTTGCACATGAAGCGGCTTTACACTATAATATGGCAACGATTGGCGTTTTAGCATTTGGTCATTATCATCATTATCCTAA
AGAAACGCGTGCATTACGAAAACGAATAGAACAAACAGGTTTAACCCTCTCAGAATATATCCCCACAGATAGACCTGCCA
GATATAAATTTCCGGAACGTAATCGTATCATTAGCGGTTTATCGCAAGGCGTACTGATTACTGAGTCTAGAGAAAGAAGC
GGCGCACAAATCACAGTAGATTTAGCTTTAGAACAAGACAGAAATGTTTATGTGTTGCCAGGCAGCTTATTTCAAAAATT
GACCATTGGAAATTTAAAACGCGCACAAGAAGGCGCGAAAATCGTTTTGAGTGCGCAAGATATTATGGAAGATTATGAAA
CATTAAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

51.916

96.959

0.503

  dprA Staphylococcus aureus MW2

51.916

96.959

0.503

  dprA Legionella pneumophila strain ERS1305867

37.966

99.662

0.378

  dprA/cilB/dalA Streptococcus pneumoniae R6

38.144

98.311

0.375

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.144

98.311

0.375

  dprA/cilB/dalA Streptococcus pneumoniae D39

38.144

98.311

0.375

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.144

98.311

0.375

  dprA/cilB/dalA Streptococcus mitis NCTC 12261

37.457

98.311

0.368

  dprA/cilB/dalA Streptococcus mitis SK321

37.457

98.311

0.368

  dprA Streptococcus mutans UA159

37.413

96.622

0.361