Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   MTX16_RS12710 Genome accession   NZ_CP094624
Coordinates   2452788..2453369 (+) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus thuringiensis strain LX43     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2447788..2458369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTX16_RS12675 - 2448784..2448990 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  MTX16_RS12680 - 2449084..2449569 (+) 486 WP_017673781.1 YhcN/YlaJ family sporulation lipoprotein -
  MTX16_RS12685 spoVAC 2449599..2450075 (+) 477 WP_000146953.1 stage V sporulation protein AC -
  MTX16_RS12690 spoVAD 2450076..2451092 (+) 1017 WP_000938963.1 stage V sporulation protein AD -
  MTX16_RS12695 spoVAE 2451089..2451439 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  MTX16_RS12700 - 2451451..2451657 (+) 207 WP_000215913.1 DUF1657 domain-containing protein -
  MTX16_RS12705 - 2451678..2452547 (+) 870 WP_000018930.1 DUF421 domain-containing protein -
  MTX16_RS12710 clpP 2452788..2453369 (+) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  MTX16_RS12715 - 2453767..2454015 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  MTX16_RS12720 whiA 2454039..2454989 (-) 951 WP_000006558.1 DNA-binding protein WhiA -
  MTX16_RS12725 - 2455078..2456031 (-) 954 WP_000712188.1 YvcK family protein -
  MTX16_RS12730 rapZ 2456035..2456916 (-) 882 WP_000138459.1 RNase adapter RapZ -
  MTX16_RS12735 - 2456937..2457395 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=670271 MTX16_RS12710 WP_001049162.1 2452788..2453369(+) (clpP) [Bacillus thuringiensis strain LX43]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=670271 MTX16_RS12710 WP_001049162.1 2452788..2453369(+) (clpP) [Bacillus thuringiensis strain LX43]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCGGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAACCACAAGTATCAACAATCTGTATCGGTATGGCTGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTACGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGTGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCACTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554