Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MON40_RS01465 Genome accession   NZ_CP094241
Coordinates   301437..301727 (+) Length   96 a.a.
NCBI ID   WP_009313167.1    Uniprot ID   A0A9X5U676
Organism   Neisseria macacae ATCC 33926     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 296437..306727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS01465 (MON40_01465) comE 301437..301727 (+) 291 WP_009313167.1 helix-hairpin-helix domain-containing protein Machinery gene
  MON40_RS01470 (MON40_01470) hslO 302058..302963 (-) 906 WP_003779708.1 Hsp33 family molecular chaperone HslO -
  MON40_RS01475 (MON40_01475) recC 303077..306283 (+) 3207 WP_003779709.1 exodeoxyribonuclease V subunit gamma Machinery gene
  MON40_RS01480 (MON40_01480) - 306353..306718 (+) 366 WP_242925973.1 hypothetical protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 9919.59 Da        Isoelectric Point: 10.5400

>NTDB_id=668291 MON40_RS01465 WP_009313167.1 301437..301727(+) (comE) [Neisseria macacae ATCC 33926]
MKKFLFAALSLLTASLSLAAVNINTASPSELEALPGIGPAKAKAIVDYRQQHGAFKSVEELKNVKGIGEGIFSKLKAEAT
VAPAAQNKAATPAAKK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=668291 MON40_RS01465 WP_009313167.1 301437..301727(+) (comE) [Neisseria macacae ATCC 33926]
ATGAAAAAATTCCTCTTTGCCGCCCTCTCCCTGCTGACCGCTTCGCTGTCGCTGGCCGCCGTCAACATCAATACCGCTTC
CCCGTCCGAGTTGGAAGCCCTGCCCGGTATCGGCCCTGCCAAAGCCAAAGCCATCGTGGACTACCGTCAACAACATGGTG
CCTTCAAATCGGTCGAGGAGTTGAAAAACGTCAAAGGTATCGGTGAGGGCATCTTCTCCAAACTGAAGGCGGAAGCAACC
GTCGCCCCGGCCGCTCAAAACAAAGCCGCCACCCCCGCCGCTAAAAAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  comE Neisseria gonorrhoeae MS11

57.576

100

0.594
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

84.375

0.448
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

89.583

0.406
  comEA Staphylococcus aureus N315

57.377

63.542

0.365
  comEA Staphylococcus aureus MW2

57.377

63.542

0.365

Multiple sequence alignment