Detailed information    

insolico Bioinformatically predicted

Overview

Name   recC   Type   Machinery gene
Locus tag   MON40_RS01475 Genome accession   NZ_CP094241
Coordinates   303077..306283 (+) Length   1068 a.a.
NCBI ID   WP_003779709.1    Uniprot ID   A0AA36UH68
Organism   Neisseria macacae ATCC 33926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 298077..311283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS01465 (MON40_01465) comE 301437..301727 (+) 291 WP_009313167.1 helix-hairpin-helix domain-containing protein Machinery gene
  MON40_RS01470 (MON40_01470) hslO 302058..302963 (-) 906 WP_003779708.1 Hsp33 family molecular chaperone HslO -
  MON40_RS01475 (MON40_01475) recC 303077..306283 (+) 3207 WP_003779709.1 exodeoxyribonuclease V subunit gamma Machinery gene
  MON40_RS01480 (MON40_01480) - 306353..306718 (+) 366 WP_242925973.1 hypothetical protein -
  MON40_RS01485 (MON40_01485) pdxA 306801..307799 (-) 999 WP_003779711.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  MON40_RS01490 (MON40_01490) - 307897..309672 (-) 1776 WP_003779712.1 J domain-containing protein -
  MON40_RS13345 - 310031..310162 (+) 132 WP_276308314.1 hypothetical protein -
  MON40_RS01495 (MON40_01495) - 310180..310473 (-) 294 WP_242925974.1 response regulator FrzS -

Sequence

Protein


Download         Length: 1068 a.a.        Molecular weight: 121570.61 Da        Isoelectric Point: 4.7237

>NTDB_id=668292 MON40_RS01475 WP_003779709.1 303077..306283(+) (recC) [Neisseria macacae ATCC 33926]
MFYLYQSNRLESLAALFAGIQRVRPLESALAAEQIVVQSQGMRRYLSVYLARELGVAANLQFSLPAGLTWQLMQKLIPDI
PALSPFSPEVMRWRLLDLFRSERFQTTSEFENVRSVLQSYLGSGESADYQLAGQLADIFDQYLVYRPQWIDAWQEGKLLG
LGEDEVWQAQLWRYLDDGNQSAPHRVELWEKLLSSLDKAHLPERFFVFGISTMAPMYLQLLQKISEHCDVFVFALNPSGQ
YWGNVIEAAQLLKGGDDADLSQTGHPLLASLGKQGRDFFDFLTEIGLEEQPVFEEVSDDTLLHCLQNDIQNLRMPSEHSR
TDLLGDGSVRIVSAHSPLRELQILKDKLLRILHEHPDWQPHDIAVLTPNIEPYSPFIEAVFGQAQGGAQALPYSVSDVKL
SRRQPLLYALEQTLDLLESRFEVDKVLPLLESGLVLRRFGLTADDLPLLHDTIAELNVHWGLDGTMRGAADNLFTWQQAL
ERIVLGWMLPDDGSSLWQNVSAWHGDVNRLDVFGRFAAFIRTLSRLAAEWRKPATAEEWTERCRDLVQSLFLPDADDQYA
LQQFEQALAKWQEETELAGFRGTLPQHTVIRHIRRFLGSESQAGFLRGGITFCSMVPMRSLPFKVICLLGLNDGDFPRNT
KAAVFDLIAKHPQKGDRARRDDDRYLFLEAIISARDILYLSYVGRSIRNDDELAPSALVSELIDTIAAMTGRRSKELAEH
WVEQHPLQPFSHRYFIADKISDDLFSTRQDYAEALNRPREQVRPFFSEALEENTPVPTVWQDDFIRFWKNPVKAWLQQTL
GWREPYRDEAWESAEPFEPQRADKIAAAYLDARRHNQDFQETAVRLDAESLLPAGELGKLWQQNFQAAAKRIDSELLQSP
KLPPFAYEIQFDGQTLQGSLGNLYQCGQVFYLDRKPNAPQRIALLLEHLIFCAVGSSETETYQTYIVQPEETTLYPAIPS
SHAQQMLQKWLTFFNLGQTRPLPFFAKTSLAAAEAYGKKQSWEDALNKAKESYHGNKVSKGQKDYTEVALVFGNEDIEPV
EGALFQGLVEELLIPLLDAVNEESSDAA

Nucleotide


Download         Length: 3207 bp        

>NTDB_id=668292 MON40_RS01475 WP_003779709.1 303077..306283(+) (recC) [Neisseria macacae ATCC 33926]
ATGTTCTACCTCTACCAATCCAACCGCCTCGAATCGCTAGCCGCCCTGTTTGCCGGAATCCAAAGGGTCAGGCCGCTTGA
GTCTGCTTTGGCGGCGGAACAGATTGTGGTGCAGAGTCAGGGGATGCGGCGTTATTTGAGCGTGTATCTGGCGCGCGAAC
TGGGGGTAGCGGCGAATTTGCAATTCAGCCTGCCGGCGGGTTTGACGTGGCAGTTGATGCAGAAGCTGATTCCCGATATT
CCCGCGCTCAGTCCGTTTTCGCCGGAGGTGATGCGCTGGCGGCTTTTGGATTTGTTCCGCAGCGAGCGTTTTCAGACGAC
CTCTGAATTTGAAAACGTCCGCTCTGTCTTGCAAAGCTATTTGGGCAGCGGCGAGTCGGCGGATTATCAGTTGGCGGGGC
AGTTGGCGGATATTTTCGACCAGTATCTGGTGTACCGGCCGCAGTGGATTGATGCCTGGCAGGAAGGCAAACTTCTGGGG
CTGGGCGAGGACGAGGTCTGGCAGGCGCAGCTTTGGCGCTATTTGGACGACGGCAACCAATCTGCGCCGCATCGTGTGGA
GCTGTGGGAAAAGCTGCTGTCGTCTTTGGATAAGGCGCACCTGCCCGAGCGGTTTTTCGTATTCGGCATTTCGACGATGG
CGCCGATGTATTTGCAGCTTTTGCAGAAAATTTCGGAACATTGCGATGTGTTTGTGTTCGCGCTCAATCCGAGCGGGCAG
TATTGGGGCAATGTGATTGAGGCGGCGCAGCTGTTGAAGGGCGGCGACGATGCGGATTTGTCGCAAACGGGGCATCCGCT
GTTGGCATCGCTGGGCAAGCAGGGGCGTGATTTTTTTGATTTTCTGACGGAAATCGGCTTGGAGGAGCAGCCTGTGTTTG
AAGAGGTTTCAGACGACACGCTGCTGCACTGCCTGCAAAACGATATTCAAAACCTGCGTATGCCGTCTGAACACAGCCGC
ACGGATTTGCTGGGCGACGGCTCCGTCCGTATCGTGTCGGCACACAGCCCCCTGCGAGAATTGCAGATTTTGAAGGACAA
GCTGTTGCGGATTCTGCACGAACATCCCGACTGGCAGCCGCACGATATTGCCGTTTTGACGCCGAACATCGAACCGTACA
GCCCGTTTATCGAGGCGGTGTTCGGGCAGGCGCAGGGCGGGGCGCAGGCTTTGCCGTATTCGGTGTCGGACGTAAAACTC
AGCCGCCGCCAGCCGCTGCTTTACGCGCTGGAGCAGACGCTGGATTTGCTGGAAAGCCGGTTTGAAGTCGATAAAGTGCT
GCCGCTGTTGGAAAGCGGTTTGGTGCTGCGCCGTTTCGGGCTGACGGCGGACGATTTGCCGCTGCTGCACGACACCATTG
CCGAATTGAACGTGCATTGGGGGTTGGACGGAACAATGCGCGGCGCAGCGGACAATTTGTTTACTTGGCAGCAGGCGTTG
GAACGCATCGTGTTGGGCTGGATGCTGCCCGACGACGGCAGCTCTCTCTGGCAAAACGTCAGCGCGTGGCACGGCGACGT
CAACCGCCTTGATGTGTTCGGCCGCTTTGCCGCCTTTATCCGCACGCTGTCCCGCCTTGCCGCCGAGTGGCGCAAACCCG
CAACGGCAGAGGAATGGACGGAACGCTGCCGCGATTTGGTGCAGTCATTATTCCTGCCCGACGCCGACGACCAATACGCC
TTGCAGCAGTTTGAGCAGGCGTTGGCAAAATGGCAGGAAGAAACCGAGTTGGCAGGCTTTCGCGGCACTTTGCCGCAACA
CACCGTTATCCGCCACATCCGCCGCTTTTTGGGCAGCGAAAGCCAAGCGGGCTTCCTGCGCGGCGGCATCACCTTTTGCA
GCATGGTGCCGATGAGGAGCCTGCCGTTTAAAGTCATCTGCCTCTTGGGTCTGAACGACGGCGATTTCCCGCGTAACACT
AAAGCCGCCGTGTTCGACCTGATTGCCAAACACCCGCAAAAAGGCGACCGCGCCCGCCGCGACGACGACCGCTACCTCTT
CCTCGAAGCCATCATCAGCGCGCGCGACATCCTTTATCTTTCCTACGTCGGCCGCAGCATCCGCAACGACGACGAACTCG
CCCCGTCCGCCCTTGTCAGCGAACTCATCGACACCATCGCCGCCATGACCGGACGGCGCAGCAAAGAGCTGGCGGAACAC
TGGGTCGAACAACATCCCCTGCAACCGTTCTCACACCGCTATTTCATCGCAGACAAAATTTCAGACGACCTCTTCAGCAC
GCGGCAGGACTACGCCGAAGCCCTCAACCGCCCGCGCGAACAGGTGCGTCCGTTTTTCAGCGAAGCCCTCGAAGAAAACA
CCCCCGTCCCGACCGTCTGGCAGGACGACTTCATCCGCTTCTGGAAAAATCCCGTCAAAGCATGGCTGCAACAAACCTTG
GGCTGGCGCGAACCCTACCGCGACGAAGCATGGGAATCCGCCGAACCCTTCGAGCCGCAACGCGCCGACAAAATCGCCGC
CGCCTACCTCGATGCCCGCCGCCACAACCAAGACTTTCAAGAAACCGCCGTCCGCCTCGACGCCGAAAGCCTGTTACCCG
CCGGTGAATTGGGTAAATTGTGGCAGCAGAATTTCCAAGCCGCCGCCAAACGCATCGACAGCGAATTGCTGCAAAGCCCC
AAACTGCCGCCCTTTGCCTATGAAATCCAGTTCGACGGGCAAACCCTGCAAGGCAGCCTCGGCAACCTGTACCAATGCGG
CCAAGTGTTCTACCTCGACCGAAAACCCAACGCCCCGCAACGCATCGCCCTCCTGCTCGAACATTTAATCTTTTGCGCAG
TAGGGTCGTCTGAAACCGAAACCTACCAAACCTATATCGTTCAGCCCGAAGAAACGACGCTTTATCCCGCAATCCCTAGC
AGCCACGCGCAACAAATGCTGCAAAAATGGCTGACGTTCTTCAACCTCGGACAAACGCGCCCGCTGCCTTTCTTCGCCAA
AACCAGCCTCGCCGCCGCCGAAGCCTACGGCAAAAAACAGAGCTGGGAAGATGCCCTGAACAAAGCCAAGGAAAGCTATC
ACGGCAACAAAGTCAGCAAAGGCCAAAAAGACTATACCGAAGTTGCCTTAGTGTTCGGCAACGAAGACATTGAGCCGGTG
GAAGGGGCGTTGTTTCAAGGATTGGTGGAAGAACTGCTGATACCGCTGCTGGACGCGGTAAATGAAGAATCGTCGGATGC
GGCATAG

Domains

Predicted by InterproScan.

RecC C-terminal domain (RecC_C)

(780-995)

Exodeoxyribonuclease V, gamma subunit (Exonuc_V_gamma)

(2-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recC Neisseria gonorrhoeae strain FA1090

72.498

100

0.726

Multiple sequence alignment