Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   MP387_RS01305 Genome accession   NZ_CP094226
Coordinates   247884..249863 (+) Length   659 a.a.
NCBI ID   WP_242747116.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 242884..254863
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS01275 (MP387_01275) - 243331..243561 (+) 231 WP_009013716.1 DUF1146 family protein -
  MP387_RS01280 (MP387_01280) murA 243585..244868 (+) 1284 WP_000411918.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  MP387_RS01285 (MP387_01285) - 244855..245049 (+) 195 WP_000739701.1 DNA-directed RNA polymerase subunit beta -
  MP387_RS01290 (MP387_01290) endA 245090..245914 (+) 825 WP_242747114.1 DNA/RNA non-specific endonuclease Machinery gene
  MP387_RS01295 (MP387_01295) - 246050..247381 (+) 1332 WP_000390020.1 hemolysin family protein -
  MP387_RS01305 (MP387_01305) amiA3 247884..249863 (+) 1980 WP_242747116.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS01310 (MP387_01310) amiC 249930..251426 (+) 1497 WP_000759891.1 ABC transporter permease Regulator
  MP387_RS01315 (MP387_01315) amiD 251426..252352 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  MP387_RS01320 (MP387_01320) amiE 252361..253428 (+) 1068 WP_242747119.1 ABC transporter ATP-binding protein Regulator
  MP387_RS01325 (MP387_01325) amiF 253439..254368 (+) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72852.89 Da        Isoelectric Point: 4.7627

>NTDB_id=668087 MP387_RS01305 WP_242747116.1 247884..249863(+) (amiA3) [Streptococcus oralis strain 1648]
MKKSRVFVAAGVALLAAGVLAACGSSKSSDSTAPKNYGYVYTADPETLDYLISGKQSTKVATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWMTSDGEEYAEVTAKDFVNGLKHAADNKSAAKYLAEDSVKGLADYIAGNNKDFASV
GVKAVDDYTLEYTLNKPEPYWNSKLAYSIFWPLNEEFEKSKGSDFGKATDPTSLLYNGPFLLRGWTAKSSIEFVKNENYW
DKDNVHLDKVTLAYYDGSDQESIERNFTSGAYSYARLFPTSSNYSKVEETYKDNIYYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQINGKEGAPLAVRNLFVKPDFVSAGEKTFGDLVTEKMTAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDIPVDQTSKNYIARIQSFKQSVETVLGEENVVIDIQQITTDE
LQNITYYAASAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAGKETS
DLNVRYEKYAAAQAWLTDSSLFLPAMSSSGAAPIISRVVPFSASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=668087 MP387_RS01305 WP_242747116.1 247884..249863(+) (amiA3) [Streptococcus oralis strain 1648]
ATGAAAAAAAGTAGAGTATTTGTTGCAGCAGGTGTTGCTTTATTAGCAGCAGGAGTACTAGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGCTATGTTTATACAGCTGACCCAGAAACGTTGGATTACCTCATTTCAG
GGAAACAAAGTACTAAGGTCGCCACTTCAAATGGTATCGATGGTCTTTTCACAAACGACAAGTATGGGAATTTAGTTCCT
GCAGTTGCAGAAGACTGGTCAGTCTCAAAAGACGGTTTGACTTATACCTACAAGATTCGTAAAGGTGTCAAATGGATGAC
ATCTGATGGCGAAGAGTATGCTGAAGTAACAGCCAAAGACTTTGTAAATGGTTTGAAACACGCAGCTGACAATAAATCAG
CAGCTAAGTATCTAGCAGAAGATTCAGTTAAAGGTCTAGCTGACTATATAGCTGGAAACAATAAAGATTTTGCTTCAGTC
GGTGTAAAAGCAGTTGATGATTACACCCTTGAATACACTTTGAACAAACCAGAACCATACTGGAACTCTAAGCTGGCCTA
CTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGATTTTGGTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAGAGGTTGGACTGCTAAGTCATCTATCGAATTTGTGAAGAATGAAAACTATTGG
GACAAAGACAATGTTCATCTTGATAAAGTAACACTTGCTTACTATGATGGTTCAGATCAAGAATCAATTGAACGTAACTT
TACAAGTGGGGCTTATAGCTATGCCCGTCTCTTCCCAACAAGTTCAAACTACTCTAAGGTAGAAGAAACATACAAAGACA
ATATTTACTACACTCCATCAGGTCCAGGTATTGGTGGTTTGGGTGTAAATATTGACCGTCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAACAAGGACTTCCGTCAGGCTTTGAACTTTGCCTT
TGACCGTACTTCTTACTCAGCACAAATTAATGGTAAGGAAGGTGCTCCTCTTGCAGTTCGTAACCTCTTTGTGAAACCAG
ACTTTGTCTCTGCAGGCGAAAAAACTTTCGGTGACTTGGTAACTGAAAAGATGACGGCTTACGGTGATGAGTGGAAGAAC
GTAAACTTTGCGGATGGTCAAGATGGACTTTTCAACGCCGATAAAGCCAAAGCCGAATTTGCCAAAGCTAAAACAGCATT
GGAAGCAGAAGGTGTGAAATTCCCTATCCACTTGGATATCCCAGTAGACCAAACATCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAGACAGTACTTGGAGAAGAAAACGTAGTCATCGATATCCAACAAATCACTACAGATGAA
CTACAGAATATTACATACTACGCAGCTAGCGCAGCGGCAGAAGATTGGGATCTCTCAGGTGCTGTTGGATGGAACCCTGA
CTATGAAGATCCATCAACTTACCTTGATATCTTGAAAACAACGAATGCTGAACAAACAAAAACCTATATGGGTTACGAAG
GTGCAGATAATGCTGCAGCGGCTCAAGTTGGTTTGAAAGAATACGATAAGTTAGTTGATGAAGCAGGAAAAGAAACAAGT
GACTTGAATGTTCGTTATGAAAAATATGCGGCTGCCCAAGCTTGGTTGACAGATAGCTCACTCTTCTTGCCAGCTATGTC
ATCAAGTGGTGCTGCACCAATCATTTCTCGTGTTGTGCCTTTCTCTGCATCATACAGTCAATCTGGAGATAAGGGCTCAG
ACGTATACTTTAAGTATATTCAGTTACAAGACAAGGTTGTAACAAAAGCTGATTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAATCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

67.576

100

0.677
  amiA Streptococcus salivarius strain HSISS4

67.678

100

0.677
  amiA3 Streptococcus thermophilus LMD-9

67.424

100

0.675

Multiple sequence alignment