Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   MP387_RS01315 Genome accession   NZ_CP094226
Coordinates   251426..252352 (+) Length   308 a.a.
NCBI ID   WP_000103692.1    Uniprot ID   A0A081R278
Organism   Streptococcus oralis strain 1648     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 246426..257352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS01305 (MP387_01305) amiA3 247884..249863 (+) 1980 WP_242747116.1 peptide ABC transporter substrate-binding protein Regulator
  MP387_RS01310 (MP387_01310) amiC 249930..251426 (+) 1497 WP_000759891.1 ABC transporter permease Regulator
  MP387_RS01315 (MP387_01315) amiD 251426..252352 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  MP387_RS01320 (MP387_01320) amiE 252361..253428 (+) 1068 WP_242747119.1 ABC transporter ATP-binding protein Regulator
  MP387_RS01325 (MP387_01325) amiF 253439..254368 (+) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator
  MP387_RS01330 (MP387_01330) - 254457..255896 (-) 1440 WP_242747130.1 TrkH family potassium uptake protein -
  MP387_RS01335 (MP387_01335) trkA 255900..257249 (-) 1350 WP_242747133.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34667.68 Da        Isoelectric Point: 9.0162

>NTDB_id=668089 MP387_RS01315 WP_000103692.1 251426..252352(+) (amiD) [Streptococcus oralis strain 1648]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVFMLGILVAIILMSFIYPMFSDFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=668089 MP387_RS01315 WP_000103692.1 251426..252352(+) (amiD) [Streptococcus oralis strain 1648]
ATGTCAACAATCGATAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGATGCCCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACTGTCTTTATGCTAGGAATTTTGGTTGCTATTA
TCTTGATGAGCTTTATTTACCCAATGTTCTCAGATTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTCTCTGCTCGT
TTTATCAAGCCCAATGCTGAACATTGGTTTGGTACAGATAGCAATGGTAAATCCTTGTTTGATGGGGTGTGGTTTGGTGC
GCGTAACTCTATCCTCATCTCTGTAATTGCAACTTTTATCAACCTTGTGATCGGGGTTATTGTTGGTGGGATTTGGGGGA
TTTCAAAATCCGTTGACCGCGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCTTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATTGTTAAAAACATCATGCCACAATTGGTATCTGTTATTGTTTCTACAATGACCTTGATGTTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTTTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCATTGACTACCTTGATTTTGGTATCTCTATCTCTTTTTGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment