Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   MP387_RS01325 Genome accession   NZ_CP094226
Coordinates   253439..254368 (+) Length   309 a.a.
NCBI ID   WP_001291308.1    Uniprot ID   A0A081R280
Organism   Streptococcus oralis strain 1648     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 248439..259368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS01310 (MP387_01310) amiC 249930..251426 (+) 1497 WP_000759891.1 ABC transporter permease Regulator
  MP387_RS01315 (MP387_01315) amiD 251426..252352 (+) 927 WP_000103692.1 oligopeptide ABC transporter permease OppC Regulator
  MP387_RS01320 (MP387_01320) amiE 252361..253428 (+) 1068 WP_242747119.1 ABC transporter ATP-binding protein Regulator
  MP387_RS01325 (MP387_01325) amiF 253439..254368 (+) 930 WP_001291308.1 ATP-binding cassette domain-containing protein Regulator
  MP387_RS01330 (MP387_01330) - 254457..255896 (-) 1440 WP_242747130.1 TrkH family potassium uptake protein -
  MP387_RS01335 (MP387_01335) trkA 255900..257249 (-) 1350 WP_242747133.1 Trk system potassium transporter TrkA -
  MP387_RS01340 (MP387_01340) - 257650..258153 (+) 504 WP_242747135.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  MP387_RS01345 (MP387_01345) - 258685..259248 (+) 564 WP_000185814.1 ECF transporter S component -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35067.28 Da        Isoelectric Point: 7.0424

>NTDB_id=668091 MP387_RS01325 WP_001291308.1 253439..254368(+) (amiF) [Streptococcus oralis strain 1648]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEIRPGHYVWANQAELARYKKALKE

Nucleotide


Download         Length: 930 bp        

>NTDB_id=668091 MP387_RS01325 WP_001291308.1 253439..254368(+) (amiF) [Streptococcus oralis strain 1648]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACATTCTCTCTTGTAGGTGAGTCTGGTAGTGGGAAAACAACCATTGGTCGTG
CCATTATTGGTTTAAATAATACTAGTAAAGGTGAGATCATCTTTGATGGTCATAAAATTAATGGGAAAAAATCTCATAAA
GAATCATCAGATTTGATCCGTCGCATCCAGATGATTTTCCAGGACCCTGCAGCTAGCTTGAATGAGCGTGCGACAGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTACCACTTGTTCAAAGATGAAGAAGATCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGACTTTTGAAAGAACACTTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGTCAACGTATCGGG
ATTGCCCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATTTCAGCCTTGGACGTATCAGTACGTGC
GCAAGTCTTGAACTTGCTCAAGAAGTTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCGCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATTGCGGTTATCTATAAGGGAGTTATCGTCGAGGTGGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATACACTCAAGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAGGTCTT
GAAAGTTTACGATCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTAGAAATTCGTCCAGGTCACTATGTTT
GGGCCAATCAAGCAGAACTTGCTCGTTACAAGAAAGCTCTTAAAGAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081R280

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

86.23

98.706

0.851
  amiF Streptococcus thermophilus LMG 18311

85.246

98.706

0.841
  amiF Streptococcus thermophilus LMD-9

84.918

98.706

0.838

Multiple sequence alignment