Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OIC43_RS29335 Genome accession   NZ_CP108876
Coordinates   6528272..6528697 (+) Length   141 a.a.
NCBI ID   WP_323180432.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00825     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6523272..6533697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIC43_RS29325 (OIC43_29315) - 6525538..6526329 (+) 792 WP_266690955.1 hypothetical protein -
  OIC43_RS29330 (OIC43_29320) - 6526453..6527298 (+) 846 WP_259927456.1 DegV family protein -
  OIC43_RS29335 comEA/celA/cilE 6528272..6528697 (+) 426 WP_323180432.1 ComEA family DNA-binding protein Machinery gene
  OIC43_RS29340 (OIC43_29330) - 6528694..6531327 (+) 2634 WP_266690957.1 ComEC/Rec2 family competence protein -
  OIC43_RS29345 (OIC43_29335) - 6531810..6532694 (+) 885 WP_266690959.1 YceI family protein -
  OIC43_RS29350 (OIC43_29340) - 6532710..6532955 (-) 246 WP_199883160.1 hypothetical protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14176.94 Da        Isoelectric Point: 7.2050

>NTDB_id=668070 OIC43_RS29335 WP_323180432.1 6528272..6528697(+) (comEA/celA/cilE) [Streptomyces sp. NBC_00825]
MSGKVRRPGIRELPSGSRVADALRAAGGVRDGADLTGLNRARVLMDGEQIVVGAPPGSSTAGGAAGVAMGSGGGSAAAGP
VSLNTATVEQLDTLPGVGPVLAQHIVDYRTQHGGFRSIDELREVNGIGDRRFADLQPLVGP

Nucleotide


Download         Length: 426 bp        

>NTDB_id=668070 OIC43_RS29335 WP_323180432.1 6528272..6528697(+) (comEA/celA/cilE) [Streptomyces sp. NBC_00825]
GTGAGCGGAAAGGTGCGAAGGCCTGGCATCCGTGAACTGCCTTCCGGATCAAGGGTCGCCGATGCGTTACGTGCGGCGGG
CGGAGTCCGGGACGGAGCGGACCTCACCGGGCTCAACCGGGCACGGGTGCTCATGGACGGAGAGCAGATCGTGGTGGGCG
CCCCGCCAGGATCTTCAACTGCCGGTGGGGCGGCAGGTGTCGCGATGGGCAGCGGCGGCGGGAGCGCTGCGGCCGGCCCG
GTCAGCCTCAACACCGCGACCGTCGAACAGTTGGACACGCTGCCGGGTGTCGGCCCGGTTCTGGCCCAGCACATCGTCGA
CTACCGCACACAGCACGGCGGTTTCCGGTCCATCGATGAACTGCGTGAGGTCAACGGGATCGGTGACCGCAGGTTCGCCG
ACCTCCAACCATTGGTGGGGCCATGA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(2-52)

Helix-hairpin-helix motif (HHH_3)

(78-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

38.849

98.582

0.383
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

37.762

100

0.383
  comEA Latilactobacillus sakei subsp. sakei 23K

33.962

100

0.383
  comEA Streptococcus thermophilus LMD-9

39.098

94.326

0.369
  comEA/celA/cilE Streptococcus pneumoniae D39

37.41

98.582

0.369
  comEA/celA/cilE Streptococcus pneumoniae R6

37.41

98.582

0.369
  comEA/celA/cilE Streptococcus pneumoniae Rx1

37.41

98.582

0.369
  comEA/celA/cilE Streptococcus mitis SK321

36.691

98.582

0.362
  comEA Bacillus subtilis subsp. subtilis str. 168

35.664

100

0.362

Multiple sequence alignment