Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   OH805_RS27080 Genome accession   NZ_CP108799
Coordinates   6023744..6024118 (-) Length   124 a.a.
NCBI ID   WP_266477124.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00879     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 6018744..6029118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH805_RS27065 (OH805_27040) - 6019007..6021109 (-) 2103 WP_406402987.1 ATP-binding protein -
  OH805_RS27070 (OH805_27045) - 6021106..6022650 (-) 1545 WP_406402989.1 glycosyltransferase -
  OH805_RS27075 (OH805_27050) - 6022647..6023747 (-) 1101 WP_406402991.1 HEAT repeat domain-containing protein -
  OH805_RS27080 (OH805_27055) chiS 6023744..6024118 (-) 375 WP_266477124.1 response regulator transcription factor Regulator
  OH805_RS27085 (OH805_27060) - 6024118..6024492 (-) 375 WP_406402992.1 response regulator -
  OH805_RS27090 (OH805_27065) - 6024774..6025205 (-) 432 WP_406405509.1 VOC family protein -
  OH805_RS27095 (OH805_27070) - 6025237..6025749 (-) 513 WP_406402994.1 pyridoxamine 5'-phosphate oxidase family protein -
  OH805_RS27100 (OH805_27075) - 6025927..6028941 (+) 3015 WP_406402996.1 bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13275.20 Da        Isoelectric Point: 4.5657

>NTDB_id=666839 OH805_RS27080 WP_266477124.1 6023744..6024118(-) (chiS) [Streptomyces sp. NBC_00879]
MPRVLIADDDGDIRDLVAFKLTQSGHEVIAVEDGMAALKAARSQPVDVALLDIRMPGMSGLDVCRELRAAPETASLPVIL
ITARSQEGDVETGFAAGADDYIIKPFSPRELSSRVQAVLTRASR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=666839 OH805_RS27080 WP_266477124.1 6023744..6024118(-) (chiS) [Streptomyces sp. NBC_00879]
ATGCCTCGAGTCCTCATAGCCGATGACGATGGCGACATACGGGACCTCGTCGCGTTCAAACTGACCCAGAGCGGTCATGA
GGTCATCGCCGTGGAGGACGGTATGGCCGCGCTCAAGGCAGCGCGCAGTCAGCCGGTCGATGTCGCTCTGCTCGACATAC
GCATGCCCGGGATGTCCGGCCTGGACGTGTGCCGCGAACTCCGCGCGGCGCCCGAGACCGCCTCGCTCCCCGTCATCCTG
ATCACTGCCCGCTCCCAGGAGGGAGACGTCGAGACGGGATTCGCCGCGGGTGCCGACGACTACATCATCAAGCCGTTCAG
CCCGCGCGAACTGAGCAGCCGGGTCCAGGCCGTGCTCACCAGGGCCTCCCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

44.167

96.774

0.427
  vicR Streptococcus mutans UA159

37.903

100

0.379
  micA Streptococcus pneumoniae Cp1015

38.211

99.194

0.379
  scnR Streptococcus mutans UA159

38.017

97.581

0.371
  ciaR Streptococcus pneumoniae Rx1

37.097

100

0.371
  ciaR Streptococcus pneumoniae D39

37.097

100

0.371
  ciaR Streptococcus pneumoniae R6

37.097

100

0.371
  ciaR Streptococcus pneumoniae TIGR4

37.097

100

0.371
  ciaR Streptococcus mutans UA159

36.29

100

0.363