Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SCSC_RS09390 Genome accession   NZ_AP014647
Coordinates   1899565..1900755 (+) Length   396 a.a.
NCBI ID   WP_006270334.1    Uniprot ID   U2XXY1
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1894565..1905755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS09365 (SCSC_1930) comE 1896361..1897110 (-) 750 WP_003071650.1 competence system response regulator transcription factor ComE Regulator
  SCSC_RS09370 (SCSC_1931) comD/comD2 1897110..1898435 (-) 1326 WP_280523174.1 GHKL domain-containing protein Regulator
  SCSC_RS09375 (SCSC_1932) - 1898452..1898598 (-) 147 WP_006270349.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  SCSC_RS09385 (SCSC_1934) rlmH 1898881..1899360 (-) 480 WP_006270335.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SCSC_RS09390 (SCSC_1935) htrA 1899565..1900755 (+) 1191 WP_006270334.1 trypsin-like peptidase domain-containing protein Regulator
  SCSC_RS09395 (SCSC_1936) spo0J 1900810..1901577 (+) 768 WP_003071657.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 41637.72 Da        Isoelectric Point: 9.8633

>NTDB_id=66600 SCSC_RS09390 WP_006270334.1 1899565..1900755(+) (htrA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MKNSSNFTKKLLWLFMVLAIGFIGGLFGNLTSSKLSTNSSTTTKVNKVTTAYKNTNSTTQAVSKVKDAVVSVITYANNNS
QNSVFGNDDSNTNNDNSQQVASEGSGVIYKKDGKYAYLVTNTHVINGAKKVDIRLADGNKVPGEIIGSDTYSDISVVRIS
ADKVKTVAEFGDSSKLTVGETAIAIGSPLGSNYANTVTQGIISSLNRNVSLKSESGQTISTQAIQTDTAINPGNSGGPLV
NIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDVINIINQLEANGTVTRPALGIQMIDITNLSNSDLSRLKLPSKVTSGV
VVRSAQAGMPAAGKLQKYDVITKVDGKDISSVSDLQSALYKHSIGDDIKITFYRNGKETTTTIKLTKSTKDLDSNN

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=66600 SCSC_RS09390 WP_006270334.1 1899565..1900755(+) (htrA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGAAAAATTCTTCAAATTTTACAAAAAAATTATTATGGCTTTTCATGGTCTTAGCTATAGGTTTTATTGGTGGTTTATT
TGGAAACTTAACCTCATCAAAATTATCAACAAATAGTTCCACAACAACTAAGGTTAACAAAGTTACTACTGCTTATAAAA
ATACAAATTCTACAACACAAGCTGTAAGCAAAGTAAAGGATGCAGTTGTATCTGTTATTACCTATGCTAATAATAATTCT
CAAAATAGTGTTTTTGGAAATGATGATTCAAATACTAATAACGATAATTCTCAACAAGTGGCTAGTGAAGGATCTGGGGT
TATTTATAAAAAAGACGGAAAATACGCCTACTTAGTGACCAATACCCATGTTATTAATGGTGCTAAAAAAGTTGATATTC
GTTTGGCTGATGGGAACAAAGTTCCTGGAGAAATTATAGGTTCAGATACTTATTCTGATATCTCTGTTGTTCGTATTAGT
GCTGATAAAGTAAAAACAGTTGCTGAGTTTGGAGATTCTAGTAAATTAACTGTTGGTGAAACAGCTATTGCGATTGGAAG
TCCACTCGGATCAAATTATGCTAATACTGTGACACAAGGAATTATTTCTAGCTTAAATCGTAATGTGTCTTTAAAATCTG
AAAGCGGTCAAACTATTTCAACACAAGCTATCCAAACTGATACAGCTATCAATCCAGGGAATTCTGGTGGTCCACTTGTA
AATATCCAAGGACAAGTAATTGGTATTACTTCAAGTAAAATTGCTAGCAACGGTGGAACTTCTGTTGAGGGATTAGGTTT
TGCCATTCCATCTAATGATGTTATTAATATTATCAATCAATTAGAAGCAAACGGAACTGTTACACGACCAGCTCTAGGAA
TCCAAATGATCGACATCACTAATCTGTCTAATTCAGATTTATCACGCTTAAAACTCCCATCCAAAGTAACTAGTGGGGTT
GTTGTACGTTCAGCTCAAGCTGGGATGCCTGCAGCAGGAAAGCTTCAAAAATATGATGTTATTACAAAAGTAGATGGCAA
AGACATTTCCTCAGTAAGTGATTTACAATCTGCTTTATACAAACATTCAATTGGTGATGATATAAAAATTACATTTTATC
GTAATGGAAAAGAAACAACAACTACTATTAAGCTGACAAAATCTACAAAAGATTTAGATTCAAATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB U2XXY1

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

74.25

100

0.75

  htrA Streptococcus mitis NCTC 12261

72.292

100

0.725

  htrA Streptococcus pneumoniae R6

72.04

100

0.722

  htrA Streptococcus pneumoniae TIGR4

72.04

100

0.722

  htrA Streptococcus pneumoniae D39

72.04

100

0.722

  htrA Streptococcus pneumoniae Rx1

72.04

100

0.722

  htrA Streptococcus mutans UA159

55.838

99.495

0.556


Multiple sequence alignment