Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SCSC_RS08265 Genome accession   NZ_AP014647
Coordinates   1685020..1686042 (-) Length   340 a.a.
NCBI ID   WP_037565861.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1680020..1691042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS08230 (SCSC_1694) - 1681041..1682240 (-) 1200 WP_006269979.1 acetate kinase -
  SCSC_RS08235 (SCSC_1695) comYH 1682287..1683240 (-) 954 WP_006269998.1 class I SAM-dependent methyltransferase Machinery gene
  SCSC_RS08240 (SCSC_1696) comGG 1683325..1683651 (-) 327 WP_003070783.1 competence type IV pilus minor pilin ComGG -
  SCSC_RS08245 (SCSC_1697) comGF/cglF 1683632..1684069 (-) 438 WP_006270001.1 competence type IV pilus minor pilin ComGF Machinery gene
  SCSC_RS08250 (SCSC_1698) comGE/cglE 1684053..1684346 (-) 294 WP_006269989.1 competence type IV pilus minor pilin ComGE Machinery gene
  SCSC_RS08255 (SCSC_1699) comYD 1684318..1684716 (-) 399 WP_006269995.1 competence type IV pilus minor pilin ComGD Machinery gene
  SCSC_RS08260 (SCSC_1700) comYC 1684706..1685023 (-) 318 WP_006269985.1 competence type IV pilus major pilin ComGC Machinery gene
  SCSC_RS08265 (SCSC_1701) comYB 1685020..1686042 (-) 1023 WP_037565861.1 competence type IV pilus assembly protein ComGB Machinery gene
  SCSC_RS08270 (SCSC_1702) comYA 1685984..1686925 (-) 942 WP_006269992.1 competence type IV pilus ATPase ComGA Machinery gene
  SCSC_RS08275 (SCSC_1703) - 1686995..1687360 (-) 366 WP_006269973.1 DUF1033 family protein -
  SCSC_RS08280 (SCSC_1704) glnA 1687548..1688894 (-) 1347 WP_006269977.1 type I glutamate--ammonia ligase -
  SCSC_RS08285 (SCSC_1705) - 1688933..1689292 (-) 360 WP_003070793.1 MerR family transcriptional regulator -
  SCSC_RS08290 (SCSC_1706) - 1689369..1689899 (-) 531 WP_006269975.1 aromatic acid exporter family protein -
  SCSC_RS08295 (SCSC_1707) - 1690039..1690323 (-) 285 WP_006269982.1 2'-5' RNA ligase family protein -
  SCSC_RS08300 (SCSC_1708) - 1690326..1690532 (-) 207 WP_006269988.1 hypothetical protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38950.16 Da        Isoelectric Point: 9.6570

>NTDB_id=66592 SCSC_RS08265 WP_037565861.1 1685020..1686042(-) (comYB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MQQDISLLSRQKRKKLSIVRQKKVVELLNNLFSSGFHLAEMIDFLKRSALLEKTYVEKMKEGLATGKPFSEIMASLGFSD
SVVTQLSLAELHGNLSLSLNKIEEYLENVSKVKKKLIEVATYPFILLIFLVFIMLGLRNYLLPQLERQNSATQLISQLPQ
IFLGSLGVVLVLLAIGFYWFRKSSKIVVFSFLARLPFCGTFIQAYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSQVVKHYPFFKKELGLIIEYGEVKSKLGCELEVYAQKTWEKFFSRINQAMNLVQPLVFVFVALV
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=66592 SCSC_RS08265 WP_037565861.1 1685020..1686042(-) (comYB) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGCAGCAGGACATATCACTTTTGAGCAGGCAGAAACGGAAAAAATTATCCATAGTTAGGCAGAAAAAAGTCGTAGAGTT
GCTGAATAATCTTTTTTCTAGCGGCTTTCATTTAGCAGAAATGATTGATTTTTTGAAGCGGAGTGCCCTGCTAGAAAAAA
CCTATGTGGAAAAGATGAAAGAGGGTTTAGCAACAGGAAAACCTTTTTCAGAAATTATGGCTAGTTTAGGATTTTCAGAT
AGTGTTGTCACCCAGCTTTCACTGGCAGAGCTACATGGGAATCTCTCACTCAGCCTGAATAAGATTGAGGAATACTTGGA
AAATGTCTCAAAAGTCAAGAAAAAGTTAATTGAAGTAGCTACTTATCCATTCATTTTACTTATTTTTTTAGTATTCATTA
TGTTAGGGCTGCGAAATTATTTACTTCCGCAGTTAGAACGCCAAAATAGTGCAACGCAGCTGATTAGTCAGTTGCCGCAA
ATTTTTCTGGGTTCATTAGGAGTAGTCCTTGTTTTGTTAGCGATAGGTTTTTATTGGTTTAGAAAAAGCTCAAAAATAGT
AGTGTTTAGCTTCTTGGCTCGACTTCCTTTTTGTGGAACTTTTATTCAAGCGTATTTGACAGCTTATTATGCGCGCGAAT
GGGGAAATATGATTGGTCAAGGTTTAGAACTCAGTCAGATTTTTCAGATGATGCAAGGGCAACGCTCTGCTATGTTTCAA
GAAATTGGAAAAGACTTAGAAGTTGCACTGCAAAATGGTCAGGAATTTTCCCAAGTGGTTAAACACTACCCGTTTTTTAA
AAAGGAATTGGGTTTGATAATTGAATACGGTGAAGTGAAATCCAAATTAGGGTGTGAATTAGAAGTTTATGCTCAAAAAA
CGTGGGAGAAGTTTTTTAGTCGGATCAATCAAGCTATGAACTTAGTGCAGCCGCTTGTCTTTGTTTTTGTGGCACTGGTT
ATTGTTTTATTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

73.529

100

0.735
  comGB/cglB Streptococcus mitis NCTC 12261

70.118

99.412

0.697
  comGB/cglB Streptococcus mitis SK321

68.75

98.824

0.679
  comGB/cglB Streptococcus pneumoniae TIGR4

68.452

98.824

0.676
  comGB/cglB Streptococcus pneumoniae R6

68.452

98.824

0.676
  comGB/cglB Streptococcus pneumoniae Rx1

68.452

98.824

0.676
  comGB/cglB Streptococcus pneumoniae D39

68.452

98.824

0.676
  comYB Streptococcus mutans UA159

62.281

100

0.626
  comYB Streptococcus mutans UA140

61.988

100

0.624
  comGB Lactococcus lactis subsp. cremoris KW2

52.522

99.118

0.521

Multiple sequence alignment