Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   SCSC_RS04380 Genome accession   NZ_AP014647
Coordinates   888055..888897 (-) Length   280 a.a.
NCBI ID   WP_006269575.1    Uniprot ID   A0AAD2SY05
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 883055..893897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS04365 (SCSC_0903) trmFO 883848..885182 (-) 1335 WP_006269568.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  SCSC_RS04370 (SCSC_0904) - 885317..885814 (-) 498 WP_003069067.1 phosphoribosylanthranilate isomerase -
  SCSC_RS04375 (SCSC_0905) topA 885876..887969 (-) 2094 WP_100207678.1 type I DNA topoisomerase -
  SCSC_RS04380 (SCSC_0906) dprA/cilB/dalA 888055..888897 (-) 843 WP_006269575.1 DNA-processing protein DprA Machinery gene
  SCSC_RS04385 (SCSC_0907) - 888980..889537 (-) 558 WP_006269506.1 sugar O-acetyltransferase -
  SCSC_RS04390 (SCSC_0908) - 889594..889816 (-) 223 Protein_849 CAT RNA binding domain-containing protein -
  SCSC_RS04395 (SCSC_0909) - 889813..890595 (-) 783 WP_006269488.1 ribonuclease HII -
  SCSC_RS04400 (SCSC_0910) ylqF 890582..891433 (-) 852 WP_006269502.1 ribosome biogenesis GTPase YlqF -
  SCSC_RS04405 (SCSC_0911) - 891553..892470 (-) 918 WP_006269577.1 MBL fold metallo-hydrolase -
  SCSC_RS04410 (SCSC_0912) - 892474..893586 (-) 1113 WP_006269540.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 280 a.a.        Molecular weight: 31175.79 Da        Isoelectric Point: 5.4273

>NTDB_id=66563 SCSC_RS04380 WP_006269575.1 888055..888897(-) (dprA/cilB/dalA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MDNFDIYKLKTAGLTNQQVINVLEYAEIREKELSVKDMAVVSECRNPALFIEKYLQLDDDLLRQEFEKFPSFSILEDVYP
WDLSEIYNPPVLLFYKGNLDLLKLPKVAVVGSRNSSRVGSQSVQKIIKELNNELVIVSGLARGIDTSAHMAALQNGGRTI
AVIGTGLDVFYPRANKKLQSYLGEHHLVLSEYGPEAEPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGRSDGCHHLIQEGAKCIASGADVLSEFQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=66563 SCSC_RS04380 WP_006269575.1 888055..888897(-) (dprA/cilB/dalA) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGATAATTTTGATATTTATAAACTAAAAACAGCTGGTTTGACCAACCAACAAGTCATCAATGTATTGGAATACGCAGA
AATTCGCGAAAAAGAATTGTCAGTCAAAGATATGGCAGTTGTCTCCGAATGTCGTAATCCTGCTCTTTTTATTGAAAAAT
ATTTACAATTAGATGATGATTTATTACGTCAAGAATTTGAGAAATTCCCATCTTTTTCTATCTTGGAAGATGTATATCCT
TGGGATTTGAGTGAAATTTATAATCCACCCGTTCTTCTTTTTTATAAAGGTAATTTGGATTTACTAAAATTACCTAAAGT
AGCTGTTGTAGGAAGTCGGAATAGTAGCCGAGTAGGCAGTCAATCCGTTCAAAAGATTATTAAAGAGCTAAACAATGAAT
TGGTTATCGTGAGTGGTTTAGCACGCGGAATTGATACCTCAGCTCACATGGCAGCATTGCAAAATGGTGGTCGAACAATT
GCAGTTATCGGAACGGGTCTAGACGTTTTTTATCCAAGGGCGAATAAAAAACTCCAATCGTATTTGGGAGAACATCATCT
AGTACTTAGTGAATATGGTCCTGAAGCAGAGCCATTAAAATTTCATTTTCCAGAGCGTAATCGGATTATAGCAGGATTGT
GTAGAGGGGTTATTGTTGCTGAAGCCAAAATGCGCTCAGGCAGCCTTATTACTTGTGAGCGAGCAATGGAAGAAGGGCGA
GATGTATTTGCTATTCCAGGGTCAATTTTAGATGGAAGAAGTGATGGCTGTCATCATTTGATTCAGGAAGGAGCAAAATG
CATCGCATCAGGGGCTGACGTACTTTCTGAATTCCAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-269)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(1-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.429

100

0.764
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

76.071

100

0.761
  dprA/cilB/dalA Streptococcus pneumoniae D39

76.071

100

0.761
  dprA/cilB/dalA Streptococcus pneumoniae R6

76.071

100

0.761
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

76.071

100

0.761
  dprA/cilB/dalA Streptococcus mitis SK321

75.714

100

0.757
  dprA Streptococcus mutans UA159

65

100

0.65
  dprA Lactococcus lactis subsp. cremoris KW2

56.786

100

0.568
  dprA Staphylococcus aureus N315

37.234

100

0.375
  dprA Legionella pneumophila strain ERS1305867

43.154

86.071

0.371
  dprA Bacillus subtilis subsp. subtilis str. 168

48.095

75

0.361

Multiple sequence alignment